Cacnb3 (calcium voltage-gated channel auxiliary subunit beta 3) - Rat Genome Database

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Gene: Cacnb3 (calcium voltage-gated channel auxiliary subunit beta 3) Chinchilla lanigera
Analyze
Symbol: Cacnb3
Name: calcium voltage-gated channel auxiliary subunit beta 3
RGD ID: 8881843
Description: ENCODES a protein that exhibits calcium channel regulator activity (ortholog); high voltage-gated calcium channel activity (ortholog); protein kinase binding (ortholog); INVOLVED IN calcium ion transmembrane transport (ortholog); calcium ion transmembrane transport via high voltage-gated calcium channel (ortholog); calcium ion transport (ortholog); PARTICIPATES IN calcium transport pathway; calcium/calcium-mediated signaling pathway; ASSOCIATED WITH Nerve Injuries (ortholog); ovarian cyst (ortholog); FOUND IN apical plasma membrane (ortholog); L-type voltage-gated calcium channel complex (ortholog); membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: calcium channel, voltage-dependent, beta 3 subunit; voltage-dependent L-type calcium channel subunit beta-3
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555007,672,828 - 7,687,420 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555007,676,331 - 7,685,174 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISS annotations to Chinchilla, Squirrel, Bonobo and/or Dog genes from Human gene annotations

Genomics

Comparative Map Data
Cacnb3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555007,672,828 - 7,687,420 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555007,676,331 - 7,685,174 (+)NCBIChiLan1.0ChiLan1.0
CACNB3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381248,814,480 - 48,828,941 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl1248,813,794 - 48,828,941 (+)EnsemblGRCh38hg38GRCh38
GRCh371249,208,263 - 49,222,724 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361247,498,779 - 47,508,991 (+)NCBINCBI36Build 36hg18NCBI36
Build 341247,498,778 - 47,508,991NCBI
Celera1248,008,638 - 48,018,850 (+)NCBICelera
Cytogenetic Map12q13.12NCBI
HuRef1246,241,454 - 46,255,965 (+)NCBIHuRef
CHM1_11249,174,031 - 49,188,542 (+)NCBICHM1_1
T2T-CHM13v2.01248,776,505 - 48,790,968 (+)NCBIT2T-CHM13v2.0
Cacnb3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391598,526,317 - 98,542,417 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1598,528,721 - 98,542,410 (+)EnsemblGRCm39 Ensembl
GRCm381598,628,436 - 98,644,536 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1598,630,840 - 98,644,529 (+)EnsemblGRCm38mm10GRCm38
MGSCv371598,462,651 - 98,474,961 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361598,463,139 - 98,472,563 (+)NCBIMGSCv36mm8
Celera15100,780,822 - 100,793,130 (+)NCBICelera
Cytogenetic Map15F1NCBI
cM Map1554.64NCBI
Cacnb3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.27129,784,799 - 129,797,074 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7129,783,674 - 129,797,074 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7131,594,886 - 131,604,409 (+)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.07133,820,432 - 133,829,955 (+)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.07133,732,933 - 133,742,457 (+)NCBIRnor_WKY
Rnor_6.07140,311,120 - 140,324,902 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7140,315,368 - 140,324,902 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X114,814,959 - 114,828,180 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47137,384,752 - 137,394,283 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.17137,461,187 - 137,470,720 (+)NCBI
Celera7126,277,809 - 126,287,303 (+)NCBICelera
Cytogenetic Map7q36NCBI
CACNB3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11240,797,293 - 40,811,409 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1240,797,293 - 40,811,409 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01239,918,022 - 39,931,386 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
CACNB3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1275,705,587 - 5,714,620 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl275,706,064 - 5,717,647 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2740,539,137 - 40,552,356 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0275,756,425 - 5,769,646 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl275,756,425 - 5,769,631 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1275,720,277 - 5,733,496 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0275,710,377 - 5,723,584 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02740,931,388 - 40,944,607 (+)NCBIUU_Cfam_GSD_1.0
Cacnb3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494566,498,659 - 66,511,978 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049365126,652,836 - 6,666,171 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CACNB3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl514,874,465 - 14,888,223 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1514,875,524 - 14,888,224 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2515,172,444 - 15,182,010 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CACNB3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11145,056,116 - 45,071,076 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1145,061,046 - 45,071,544 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037201,075,907 - 201,090,442 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cacnb3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248163,334,684 - 3,347,842 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248163,334,934 - 3,348,355 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000003040   ⟹   ENSCLAP00000002978
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049555007,672,828 - 7,687,420 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000003041   ⟹   ENSCLAP00000002979
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049555007,673,728 - 7,687,420 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000003042   ⟹   ENSCLAP00000002980
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049555007,676,331 - 7,687,420 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000003043   ⟹   ENSCLAP00000002981
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049555007,676,374 - 7,684,216 (+)Ensembl
RefSeq Acc Id: XM_005406665   ⟹   XP_005406722
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555007,676,331 - 7,685,174 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005406722 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005406722   ⟸   XM_005406665
- UniProtKB: A0A8C2UT92 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000002981   ⟸   ENSCLAT00000003043
RefSeq Acc Id: ENSCLAP00000002979   ⟸   ENSCLAT00000003041
RefSeq Acc Id: ENSCLAP00000002980   ⟸   ENSCLAT00000003042
RefSeq Acc Id: ENSCLAP00000002978   ⟸   ENSCLAT00000003040
Protein Domains
SH3


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000002138 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSCLAP00000002978.1 UniProtKB/TrEMBL
  ENSCLAP00000002979.1 UniProtKB/TrEMBL
  ENSCLAP00000002980 ENTREZGENE
  ENSCLAP00000002980.1 UniProtKB/TrEMBL
  ENSCLAP00000002981.1 UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000003040.1 UniProtKB/TrEMBL
  ENSCLAT00000003041.1 UniProtKB/TrEMBL
  ENSCLAT00000003042 ENTREZGENE
  ENSCLAT00000003042.1 UniProtKB/TrEMBL
  ENSCLAT00000003043.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.300 UniProtKB/TrEMBL
InterPro CACNB3_SH3 UniProtKB/TrEMBL
  GK/Ca_channel_bsu UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
  SH3-like_dom_sf UniProtKB/TrEMBL
  SH3_domain UniProtKB/TrEMBL
  VDCC_L_b3su UniProtKB/TrEMBL
  VDCC_L_bsu UniProtKB/TrEMBL
NCBI Gene Cacnb3 ENTREZGENE
Pfam Guanylate_kin UniProtKB/TrEMBL
  VGCC_beta4Aa_N UniProtKB/TrEMBL
PRINTS LCACHANNELB UniProtKB/TrEMBL
  LCACHANNELB3 UniProtKB/TrEMBL
PROSITE SH3 UniProtKB/TrEMBL
SMART GuKc UniProtKB/TrEMBL
Superfamily-SCOP SSF50044 UniProtKB/TrEMBL
  SSF52540 UniProtKB/TrEMBL
UniProt A0A8C2UN14_CHILA UniProtKB/TrEMBL
  A0A8C2UPX2_CHILA UniProtKB/TrEMBL
  A0A8C2UQU1_CHILA UniProtKB/TrEMBL
  A0A8C2UT92 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-03 Cacnb3  calcium voltage-gated channel auxiliary subunit beta 3    calcium channel, voltage-dependent, beta 3 subunit  Symbol and/or name change 5135510 APPROVED