Itgad (integrin subunit alpha D) - Rat Genome Database

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Gene: Itgad (integrin subunit alpha D) Chinchilla lanigera
Analyze
Symbol: Itgad
Name: integrin subunit alpha D
RGD ID: 8881085
Description: ENCODES a protein that exhibits protein-containing complex binding (ortholog); INVOLVED IN activated T cell proliferation (ortholog); heterotypic cell-cell adhesion (ortholog); PARTICIPATES IN integrin mediated signaling pathway; ASSOCIATED WITH branched-chain keto acid dehydrogenase kinase deficiency (ortholog); genetic disease (ortholog); prostate cancer (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: integrin alpha-D; integrin, alpha D
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554938,233,098 - 8,260,613 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Itgad
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554938,233,098 - 8,260,613 (+)NCBIChiLan1.0ChiLan1.0
ITGAD
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381631,393,335 - 31,426,505 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1631,393,335 - 31,426,505 (+)EnsemblGRCh38hg38GRCh38
GRCh371631,404,656 - 31,437,826 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361631,312,134 - 31,345,327 (+)NCBINCBI36Build 36hg18NCBI36
Celera1628,870,558 - 28,903,646 (-)NCBICelera
Cytogenetic Map16p11.2NCBI
HuRef1628,964,899 - 28,998,212 (+)NCBIHuRef
CHM1_11632,723,321 - 32,756,513 (+)NCBICHM1_1
T2T-CHM13v2.01631,780,736 - 31,813,905 (+)NCBIT2T-CHM13v2.0
Itgad
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397127,773,105 - 127,822,988 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7127,753,548 - 127,822,988 (+)EnsemblGRCm39 Ensembl
GRCm387128,173,933 - 128,205,504 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7128,154,376 - 128,223,816 (+)EnsemblGRCm38mm10GRCm38
MGSCv377135,317,460 - 135,349,018 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv367127,965,115 - 127,996,645 (+)NCBIMGSCv36mm8
Celera7128,007,533 - 128,041,159 (+)NCBICelera
Cytogenetic Map7F3NCBI
cM Map770.0NCBI
Itgad
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81192,190,204 - 192,218,864 (+)NCBIGRCr8
mRatBN7.21182,759,762 - 182,788,422 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1182,759,740 - 182,788,161 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1191,110,263 - 191,138,916 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01198,296,358 - 198,325,011 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01190,966,810 - 190,995,472 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01199,595,968 - 199,623,931 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1199,495,298 - 199,623,960 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01206,632,107 - 206,669,878 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41187,436,291 - 187,464,212 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11187,586,171 - 187,614,093 (+)NCBI
Celera1180,405,943 - 180,434,140 (+)NCBICelera
Cytogenetic Map1q37NCBI
ITGAD
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21834,592,155 - 34,635,352 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11639,393,576 - 39,436,777 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01623,539,562 - 23,572,705 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11631,764,268 - 31,797,249 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1631,724,113 - 31,797,249 (+)Ensemblpanpan1.1panPan2
LOC607096
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1616,860,230 - 16,886,249 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha618,463,618 - 18,480,963 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0616,985,424 - 17,011,496 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1616,788,550 - 16,814,600 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0616,707,725 - 16,733,766 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0617,019,621 - 17,045,674 (-)NCBIUU_Cfam_GSD_1.0
Itgad
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344125,625,814 - 125,654,013 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365438,382,942 - 8,411,350 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365438,382,942 - 8,412,486 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ITGAD
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl317,136,187 - 17,169,667 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1317,136,161 - 17,169,776 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2317,401,193 - 17,420,157 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ITGAD
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1528,095,341 - 28,128,498 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660681,312,447 - 1,345,990 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_013504860   ⟹   XP_013360314
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554938,233,098 - 8,260,613 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013360314 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_013360314   ⟸   XM_013504860
- Sequence:


Additional Information

Database Acc Id Source(s)
NCBI Gene Itgad ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-16 Itgad  integrin subunit alpha D    integrin, alpha D  Symbol and/or name change 5135510 APPROVED