Plbd1 (phospholipase B domain containing 1)

Gene: Plbd1 (phospholipase B domain containing 1) Chinchilla lanigera

Analyze

Symbol:

Plbd1

Name:

phospholipase B domain containing 1

RGD ID:

8880839

Description:

ASSOCIATED WITH autosomal dominant intellectual developmental disorder 6 (ortholog); COVID-19 (ortholog); genetic disease (ortholog); FOUND IN extracellular space (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

phospholipase B-like 1

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

ChiLan1.0 - Chinchilla ChiLan1.0 Assembly

Position:

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955413	11,266,696 - 11,326,055 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955413	11,266,589 - 11,326,565 (-)	NCBI	ChiLan1.0	ChiLan1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autosomal dominant intellectual developmental disorder 6 (ISO)

COVID-19 (ISO)

genetic disease (ISO)

lung non-small cell carcinoma (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Cellular Component

extracellular space (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Transitive Annotation Pipeline	Automated assignment of GO, PW and RDO ISO annotations across species

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

Plbd1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955413	11,266,696 - 11,326,055 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955413	11,266,589 - 11,326,565 (-)	NCBI	ChiLan1.0	ChiLan1.0

PLBD1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	12	14,503,661 - 14,567,883 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	12	14,503,661 - 14,567,883 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	12	14,656,595 - 14,720,817 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	12	14,547,864 - 14,612,058 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	12	19,801,692 - 19,865,899 (-)	NCBI		Celera
Cytogenetic Map	12	p13.1	NCBI
HuRef	12	14,425,733 - 14,490,024 (-)	NCBI		HuRef
CHM1_1	12	14,621,583 - 14,685,851 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	12	14,381,172 - 14,445,388 (-)	NCBI		T2T-CHM13v2.0

Plbd1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	6	136,589,069 - 136,639,301 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	6	136,589,068 - 136,638,926 (-)	Ensembl		GRCm39 Ensembl
GRCm38	6	136,612,071 - 136,662,303 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	6	136,612,070 - 136,661,928 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	6	136,560,592 - 136,610,414 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	6	136,576,267 - 136,626,012 (-)	NCBI		MGSCv36	mm8
Celera	6	139,609,300 - 139,657,957 (-)	NCBI		Celera
Cytogenetic Map	6	G1	NCBI
cM Map	6	66.59	NCBI

Plbd1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	4	171,204,198 - 171,260,488 (-)	NCBI		GRCr8
mRatBN7.2	4	169,472,983 - 169,529,277 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	4	169,472,983 - 169,529,277 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	4	175,768,317 - 175,824,754 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	4	171,549,440 - 171,605,726 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	4	170,173,961 - 170,230,404 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	4	170,564,387 - 170,620,681 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	4	170,564,367 - 170,620,703 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	4	234,823,110 - 234,879,736 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	4	173,611,465 - 173,667,759 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	4	173,856,588 - 173,912,883 (-)	NCBI
Celera	4	158,056,782 - 158,113,069 (-)	NCBI		Celera
Cytogenetic Map	4	q43	NCBI

PLBD1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	10	19,954,390 - 20,018,571 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	12	19,951,150 - 20,015,331 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	12	14,509,377 - 14,573,087 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	12	14,905,980 - 14,970,004 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	12	14,905,980 - 14,969,902 (-)	Ensembl	panpan1.1		panPan2

PLBD1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	27	32,031,073 - 32,081,910 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	27	32,030,824 - 32,081,918 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	27	14,367,131 - 14,417,748 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	27	32,338,338 - 32,390,483 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	27	32,337,820 - 32,390,387 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	27	32,227,208 - 32,279,318 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	27	32,185,940 - 32,237,948 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	27	14,098,538 - 14,149,153 (-)	NCBI		UU_Cfam_GSD_1.0

Plbd1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404945	93,141,422 - 93,190,991 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936587	2,869,006 - 2,918,511 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936587	2,869,059 - 2,918,628 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

PLBD1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	5	57,948,779 - 58,022,058 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	5	57,950,872 - 58,022,059 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	5	61,337,117 - 61,373,382 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

PLBD1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	11	14,397,766 - 14,468,292 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	11	14,397,877 - 14,468,125 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666069	20,843,944 - 20,913,707 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Plbd1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624752	23,422,716 - 23,468,087 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624752	23,408,510 - 23,468,477 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_013511442	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AGCD01013956	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AGCD01013957	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GBCE01152183	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSCLAT00000022922 ⟹ ENSCLAP00000022713

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955413	11,266,696 - 11,326,055 (-)	Ensembl

RefSeq Acc Id:

ENSCLAT00000022923 ⟹ ENSCLAP00000022714

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955413	11,266,696 - 11,326,055 (-)	Ensembl

RefSeq Acc Id:

ENSCLAT00000022924 ⟹ ENSCLAP00000022715

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955413	11,266,696 - 11,308,004 (-)	Ensembl

RefSeq Acc Id:

XM_013511442 ⟹ XP_013366896

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955413	11,266,589 - 11,326,565 (-)	NCBI

Sequence:

show sequence

AGACCCCACGGGGGCTCGGGGTTATCTAGTTTCAGTTCTGCGGGAATCATGCCCTGGGGGCGTC
CGCAGCCAAGAAAGAGAAGCGAAGGATCAAAAGACTCCACCTGTAGCAAATGGATTTGGGTTAA
ACAGCCTAGGATGCAAGTCCTGTGAGGACGTCTCCAAAATGCCCAGGCAGCAGAGCTGCGCGTA
GGCAAAGGTATGCGCTCCAGTGTCCCTCCGGGCGTCTCATCCACTGCCCCCGAGTGGCGGACGG
GGAGGCAGAGGCTCGTGGGGCGGCAGTAAACCGATGCCTGCAAGCCCTGGGCCATCAAAAACTG
CCCAAGGGATCGAGGGAAAGGGCGCTCAGCCGCTGCGTTTCCCAGAAGCGCAGCCCAGAAACTT
TCCCAGCCCGGCCCACAGGTTGTTAGAGGGTCAGGCCCAAAGGACCCGCCTTTCCCAGCCCGAG
GCCCCGCAGGACAGGACGAAGGTGGTTCCCCAAGGTCACGTTAGCTTCCGTGCCCCTAAAAGCC
CCGATTAGGCAGGGCTCATGCAAGAAGAAAGTTAAGGACGCGCCAACCTCTGGGACGCACGCAG
CGCCGCTCTGAGAACAGCTGCCACCGCCGGCCCAGCGCGCCCGAGTCCCGCGGAGCCATGGCCC
TGGGCGGCCCCGGCCGGAGCCCCGAGCTGCCGAGGCTGTCGCCGCTGCTCCTCCTGCCTCTGCT
GCTGCCCTTGGCCGCCGCGCGGCGGCCCAGCGCACCCGGAGTTCACTATGCAACTGCATACTGG
GTACCCGACACAAAGACAGTAGAAGTCAAAGATGTCCTGGACAAGAATGGGGATGCATATGGCT
ATTACAATAATTCTATGAAAACCACTGGCTGGGGCATCCTGGAGATCAAAGCTGGGTATGGCTC
TCAGGACCTGCACAATGAGATCATCATGTTTGTGGCTGGCTTTTTAGAGGGTTACCTCACTGCC
CTACACATGAATGACCACTTCACGAATCTCTACCCTCAGATGATCAAGAAACCATCTATCATAA
GTCAAGTACAGGACTTTATGAAGAAGCAGGACACGTGGACTCGGGAAAACATCAAAGCAAACAA
GAATGACTCGTTTTGGAGACACACAGGCTATGTTATGTCACAACTGGATGGGCTTTATGTAGGA
GCCAGGAAGAGGGCTACAGCAGAAAATATAAAGCCCATGAGCATGTTTCAGATTCAGTTTCTGA
ATGCGGTTGGAGACCTGCTGGATCTGATTCCCTCTTTCTCTTCCACAAAAGACACTAGCACGAA
GTTCTTTAAGAGATGGGACATGGGACATTGCTCTGCTCTTATTAAGGTTCTTCCTGGATTTGAG
AACATCTATTTTGGTCACTCAAGCTGGTACACATACGCAGCCATGCTCAGGATATACAAACACT
GGGACTTCAACATCAAAGATGAAGACACCAGCAGTAGCCGCCTCTCTTTCAGCAGTTACCCAGG
GTTTCTGGAGTCCCTGGATGACTTTTACATTCTTAGTAGTGGTTTGATATTGCTGCAGACCACA
AACAGTGTGTATAATAAAACCCTACTAAAGCTGGTGACACCCGAGTCTCTCTTGGCTTGGCAAA
GAGTTCGTGTGGCCAATATGATGGCAGATGGCGGCAAGAGTTGGGCAGACATCTTTTCAAAATA
CAACTCTGGCACCTATAATAATCAATATATGGTTCTGGACTTGAAGAAGGTGAAGCTGAATAAG
AGTCTTGACCGAGGCACACTGTATGTTGTGGAGCAAATTCCTACATATGTAGAATATTCTGAAC
AAACTGATATTCTACGAAAAGGATACTGGCCTTCCTACAACGTTCCTTTCCATGAAAAAATCTA
CAACTGGAGCGGCTACCAGCTATTAGTTCGCAGGCTGGGTTTGGACTACTCTTATGACTTAGCT
CCACGCGCCAAAATCTTCCGGCGGGACCAAGGAAAAGTGACTGATATGGCATCCATGAAATATA
TCTTGCGATACAACAATTATCAAGAGGACCGTTACAGTAAGGGTGATCCCTGCAGTACCATCTG
CTGCCGTGAGGACCTGAATGAAGCTAACCCAAGTCCTGGAGGCTGTTATGACACGAAGGTGGCA
GACATCTACCTAGCATCGGAATACACAGCCCATGCCATTAGTGGTCCCACTGTCCAAGGTGGCC
TCCCTGTTTTTCGCTGGAACCGTTTCAACGAAACTCTCCATCAGGGCCTGCCAGAGGTCTATGA
CTTTGACTTTATTACCATGAAACCGATTCTGAAACCTAATATAAAATGAAGGAGGGAGGTGAGG
GAACAGAAACAGCTATAAAGATACCAAAGACCCTTACTTTAGCTATGTTTTTTTTCCATTCGAA
TAAAATAAATTCAGTTTGTCACTTTCAA

hide sequence

Protein Sequences


Protein RefSeqs	XP_013366896	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCLAP00000022713.1
	ENSCLAP00000022714
	ENSCLAP00000022714.1
	ENSCLAP00000022715.1

RefSeq Acc Id:

XP_013366896 ⟸ XM_013511442

- UniProtKB:

A0A8C2W150 (UniProtKB/TrEMBL), A0A8C2W6N6 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MALGGPGRSPELPRLSPLLLLPLLLPLAAARRPSAPGVHYATAYWVPDTKTVEVKDVLDKNGDA
YGYYNNSMKTTGWGILEIKAGYGSQDLHNEIIMFVAGFLEGYLTALHMNDHFTNLYPQMIKKPS
IISQVQDFMKKQDTWTRENIKANKNDSFWRHTGYVMSQLDGLYVGARKRATAENIKPMSMFQIQ
FLNAVGDLLDLIPSFSSTKDTSTKFFKRWDMGHCSALIKVLPGFENIYFGHSSWYTYAAMLRIY
KHWDFNIKDEDTSSSRLSFSSYPGFLESLDDFYILSSGLILLQTTNSVYNKTLLKLVTPESLLA
WQRVRVANMMADGGKSWADIFSKYNSGTYNNQYMVLDLKKVKLNKSLDRGTLYVVEQIPTYVEY
SEQTDILRKGYWPSYNVPFHEKIYNWSGYQLLVRRLGLDYSYDLAPRAKIFRRDQGKVTDMASM
KYILRYNNYQEDRYSKGDPCSTICCREDLNEANPSPGGCYDTKVADIYLASEYTAHAISGPTVQ
GGLPVFRWNRFNETLHQGLPEVYDFDFITMKPILKPNIK

hide sequence

RefSeq Acc Id:

ENSCLAP00000022713 ⟸ ENSCLAT00000022922

RefSeq Acc Id:

ENSCLAP00000022715 ⟸ ENSCLAT00000022924

RefSeq Acc Id:

ENSCLAP00000022714 ⟸ ENSCLAT00000022923

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCLAG00000015571	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCLAT00000022922.1	UniProtKB/TrEMBL
	ENSCLAT00000022923	ENTREZGENE
	ENSCLAT00000022923.1	UniProtKB/TrEMBL
	ENSCLAT00000022924.1	UniProtKB/TrEMBL
Gene3D-CATH	1.10.439.20	UniProtKB/TrEMBL
	2.10.70.60	UniProtKB/TrEMBL
	3.60.60.20	UniProtKB/TrEMBL
InterPro	PLipase_B-like	UniProtKB/TrEMBL
	PLipase_B-like_dom1	UniProtKB/TrEMBL
	PLipase_B-like_dom2	UniProtKB/TrEMBL
	PLipase_B-like_dom3	UniProtKB/TrEMBL
NCBI Gene	Plbd1	ENTREZGENE
PANTHER	PHOSPHOLIPASE B-LIKE 1	UniProtKB/TrEMBL
	PTHR12370	UniProtKB/TrEMBL
Pfam	Phospholip_B	UniProtKB/TrEMBL
UniProt	A0A8C2W150	ENTREZGENE, UniProtKB/TrEMBL
	A0A8C2W3L2_CHILA	UniProtKB/TrEMBL
	A0A8C2W6N6	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD