Mybbp1a (MYB binding protein 1a) - Rat Genome Database

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Gene: Mybbp1a (MYB binding protein 1a) Chinchilla lanigera
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Symbol: Mybbp1a
Name: MYB binding protein 1a
RGD ID: 8879551
Description: ENCODES a protein that exhibits E-box binding (ortholog); sequence-specific DNA binding (ortholog); transcription corepressor activity (ortholog); INVOLVED IN cellular response to glucose starvation (ortholog); circadian regulation of gene expression (ortholog); intrinsic apoptotic signaling pathway by p53 class mediator (ortholog); ASSOCIATED WITH autistic disorder (ortholog); Meniere's disease (ortholog); Prostatic Neoplasms (ortholog); FOUND IN B-WICH complex (ortholog); cytoplasm (ortholog); intracellular membrane-bounded organelle (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: MYB binding protein (P160) 1a; myb-binding protein 1A
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495546712,390,037 - 12,404,971 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495546712,390,371 - 12,405,055 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Mybbp1a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495546712,390,037 - 12,404,971 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495546712,390,371 - 12,405,055 (+)NCBIChiLan1.0ChiLan1.0
MYBBP1A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38174,538,904 - 4,555,384 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl174,538,897 - 4,555,386 (-)EnsemblGRCh38hg38GRCh38
GRCh37174,442,199 - 4,458,679 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36174,388,940 - 4,405,430 (-)NCBINCBI36Build 36hg18NCBI36
Build 34174,388,949 - 4,405,393NCBI
Celera174,454,387 - 4,470,874 (-)NCBICelera
Cytogenetic Map17p13.2NCBI
HuRef174,331,585 - 4,348,073 (-)NCBIHuRef
CHM1_1174,451,000 - 4,467,488 (-)NCBICHM1_1
T2T-CHM13v2.0174,428,802 - 4,445,280 (-)NCBIT2T-CHM13v2.0
Mybbp1a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391172,332,153 - 72,342,596 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1172,332,181 - 72,342,594 (+)EnsemblGRCm39 Ensembl
GRCm381172,441,327 - 72,451,770 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1172,441,355 - 72,451,768 (+)EnsemblGRCm38mm10GRCm38
MGSCv371172,254,880 - 72,265,052 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361172,257,573 - 72,267,745 (+)NCBIMGSCv36mm8
Celera1179,961,852 - 79,972,017 (+)NCBICelera
Cytogenetic Map11B4NCBI
cM Map1144.29NCBI
Mybbp1a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81057,555,458 - 57,565,819 (+)NCBIGRCr8
mRatBN7.21057,056,897 - 57,067,258 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1057,056,874 - 57,067,255 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1061,720,100 - 61,730,461 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01061,208,580 - 61,218,941 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01056,707,662 - 56,718,023 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01059,000,400 - 59,010,794 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1059,000,397 - 59,010,903 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01058,739,440 - 58,749,828 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41059,325,648 - 59,335,604 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11059,339,270 - 59,349,227 (+)NCBI
Celera1056,183,820 - 56,193,776 (+)NCBICelera
Cytogenetic Map10q24NCBI
MYBBP1A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21912,155,536 - 12,172,025 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11714,123,960 - 14,140,372 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0174,593,741 - 4,610,203 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1174,586,431 - 4,603,097 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl174,586,431 - 4,603,097 (-)Ensemblpanpan1.1panPan2
MYBBP1A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1530,528,141 - 30,538,815 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl530,526,720 - 30,539,483 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha530,724,027 - 30,735,636 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0530,628,664 - 30,640,227 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl530,628,666 - 30,640,228 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1530,594,735 - 30,607,922 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0530,553,266 - 30,564,853 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0530,726,713 - 30,738,313 (-)NCBIUU_Cfam_GSD_1.0
Mybbp1a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560254,792,432 - 54,805,953 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366771,095,420 - 1,108,496 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366771,095,022 - 1,108,545 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MYBBP1A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1250,491,044 - 50,506,050 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11250,491,042 - 50,506,085 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21252,489,615 - 52,504,655 (-)NCBISscrofa10.2Sscrofa10.2susScr3
MYBBP1A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1164,019,823 - 4,036,811 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl164,016,222 - 4,036,782 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605917,624,771 - 17,641,765 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Mybbp1a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247867,103,811 - 7,118,569 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSCLAT00000025529   ⟹   ENSCLAP00000025282
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495546712,390,037 - 12,404,971 (+)Ensembl
RefSeq Acc Id: XM_005399687   ⟹   XP_005399744
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495546712,390,371 - 12,405,055 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005399744 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000025282
  ENSCLAP00000025282.1
RefSeq Acc Id: XP_005399744   ⟸   XM_005399687
- UniProtKB: A0A8C2WDG1 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSCLAP00000025282   ⟸   ENSCLAT00000025529


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000017368 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000025529 ENTREZGENE
  ENSCLAT00000025529.1 UniProtKB/TrEMBL
InterPro ARM-type_fold UniProtKB/TrEMBL
  DNA_pol_V/MYBBP1A UniProtKB/TrEMBL
NCBI Gene Mybbp1a ENTREZGENE
PANTHER MYB-BINDING PROTEIN 1A UniProtKB/TrEMBL
  PTHR13213 UniProtKB/TrEMBL
Pfam DNA_pol_phi UniProtKB/TrEMBL
Superfamily-SCOP SSF48371 UniProtKB/TrEMBL
UniProt A0A8C2WDG1 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-03 Mybbp1a  MYB binding protein 1a    MYB binding protein (P160) 1a  Symbol and/or name change 5135510 APPROVED