Parp4 (poly(ADP-ribose) polymerase family member 4) - Rat Genome Database

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Gene: Parp4 (poly(ADP-ribose) polymerase family member 4) Chinchilla lanigera
Analyze
Symbol: Parp4
Name: poly(ADP-ribose) polymerase family member 4
RGD ID: 8879030
Description: ENCODES a protein that exhibits enzyme binding (ortholog); NAD+ ADP-ribosyltransferase activity (ortholog); NAD+-protein ADP-ribosyltransferase activity (ortholog); INVOLVED IN inflammatory response (ortholog); protein modification process (ortholog); telomere maintenance via telomerase (ortholog); PARTICIPATES IN ADP-ribosylation pathway, mono and poly-ribosylation; ASSOCIATED WITH Colonic Neoplasms (ortholog); genetic disease (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nucleoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: poly (ADP-ribose) polymerase family, member 4; poly [ADP-ribose] polymerase 4
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495542520,957,032 - 21,047,971 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Parp4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495542520,957,032 - 21,047,971 (+)NCBIChiLan1.0ChiLan1.0
PARP4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381324,420,931 - 24,512,778 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1324,420,931 - 24,512,778 (-)EnsemblGRCh38hg38GRCh38
GRCh371324,995,069 - 25,086,916 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361323,893,069 - 23,984,948 (-)NCBINCBI36Build 36hg18NCBI36
Celera136,058,392 - 6,150,239 (-)NCBICelera
Cytogenetic Map13q12.12NCBI
HuRef135,807,328 - 5,899,247 (-)NCBIHuRef
CHM1_11324,963,059 - 25,055,268 (-)NCBICHM1_1
T2T-CHM13v2.01323,628,369 - 23,720,247 (-)NCBIT2T-CHM13v2.0
Parp4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391456,812,982 - 56,897,256 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1456,813,076 - 56,897,251 (+)EnsemblGRCm39 Ensembl
GRCm381456,575,619 - 56,659,798 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1456,575,619 - 56,659,794 (+)EnsemblGRCm38mm10GRCm38
MGSCv371457,194,456 - 57,278,635 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361455,526,056 - 55,613,904 (+)NCBIMGSCv36mm8
Celera1454,373,436 - 54,457,522 (+)NCBICelera
Cytogenetic Map14C3NCBI
cM Map1428.31NCBI
Parp4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81534,806,203 - 34,908,492 (+)NCBIGRCr8
mRatBN7.21530,690,503 - 30,792,868 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1530,686,613 - 30,828,810 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.01536,809,362 - 36,911,167 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01540,662,704 - 40,763,497 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41535,564,314 - 35,659,367 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11535,562,158 - 35,675,067 (+)NCBI
Celera1530,402,728 - 30,506,603 (+)NCBICelera
Cytogenetic Map15p12NCBI
PARP4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21424,038,802 - 24,133,033 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11315,147,700 - 15,242,149 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0135,734,322 - 5,827,323 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11324,029,216 - 24,121,668 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1324,029,405 - 24,113,075 (-)Ensemblpanpan1.1panPan2
PARP4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12518,447,413 - 18,544,990 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2518,447,413 - 18,544,777 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2518,476,239 - 18,566,533 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02518,584,762 - 18,682,254 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2518,585,841 - 18,682,365 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12518,450,479 - 18,540,786 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02518,462,666 - 18,552,839 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02518,519,499 - 18,609,531 (-)NCBIUU_Cfam_GSD_1.0
Parp4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945120,501,413 - 120,590,813 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367202,048,455 - 2,119,662 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367202,049,045 - 2,138,649 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PARP4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl11359,476 - 442,436 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.111359,503 - 432,224 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21187,072,353 - 87,132,405 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PARP4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.134,374,610 - 4,468,504 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl34,374,824 - 4,468,505 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605739,976,661 - 40,073,664 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Parp4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477618,048,642 - 18,159,198 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462477618,049,512 - 18,159,149 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_013514867   ⟹   XP_013370321
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495542520,957,032 - 21,047,971 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013370321 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_013370321   ⟸   XM_013514867
- Sequence:


Additional Information

Database Acc Id Source(s)
NCBI Gene LOC102023718 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-16 Parp4  poly(ADP-ribose) polymerase family member 4    poly (ADP-ribose) polymerase family, member 4  Symbol and/or name change 5135510 APPROVED
2015-08-25 Parp4  poly (ADP-ribose) polymerase family, member 4  LOC102023718  poly [ADP-ribose] polymerase 4-like  Symbol and/or name change 5135510 APPROVED