Pglyrp4 (peptidoglycan recognition protein 4)

Gene: Pglyrp4 (peptidoglycan recognition protein 4) Chinchilla lanigera

Analyze

Symbol:

Pglyrp4

Name:

peptidoglycan recognition protein 4

RGD ID:

8877772

Description:

ENCODES a protein that exhibits peptidoglycan binding (ortholog); peptidoglycan immune receptor activity (ortholog); protein heterodimerization activity (ortholog); INVOLVED IN antimicrobial humoral immune response mediated by antimicrobial peptide (ortholog); biological process involved in interaction with host (ortholog); defense response to Gram-positive bacterium (ortholog); ASSOCIATED WITH gastrointestinal stromal tumor (ortholog); genetic disease (ortholog); immunodeficiency 42 (ortholog); FOUND IN protein-containing complex (ortholog)

Type:

protein-coding

RefSeq Status:

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

ChiLan1.0 - Chinchilla ChiLan1.0 Assembly

Position:

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955592	100,088 - 111,610 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955592	100,022 - 111,609 (+)	NCBI	ChiLan1.0	ChiLan1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

gastrointestinal stromal tumor (ISO)

genetic disease (ISO)

immunodeficiency 42 (ISO)

MHC class II deficiency (ISO)

parathyroid carcinoma (ISO)

severe congenital neutropenia 3 (ISO)

severe congenital neutropenia 5 (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

antimicrobial humoral immune response mediated by antimicrobial peptide (ISO)

biological process involved in interaction with host (ISO)

defense response to Gram-positive bacterium (ISO)

detection of bacterium (ISO)

negative regulation of natural killer cell differentiation involved in immune response (ISO)

negative regulation of type II interferon production (ISO)

Cellular Component

protein-containing complex (ISO)

Molecular Function

peptidoglycan binding (ISO)

peptidoglycan immune receptor activity (ISO)

protein heterodimerization activity (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Transitive Annotation Pipeline	Automated assignment of GO, PW and RDO ISO annotations across species

Additional References at PubMed

PMID:22301074

Genomics

Comparative Map Data

Pglyrp4
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955592	100,088 - 111,610 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955592	100,022 - 111,609 (+)	NCBI	ChiLan1.0	ChiLan1.0

PGLYRP4
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	153,330,120 - 153,348,841 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	153,330,120 - 153,348,841 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	1	153,302,596 - 153,321,317 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	151,569,220 - 151,587,646 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	1	150,115,671 - 150,134,095	NCBI
Celera	1	126,373,854 - 126,392,283 (-)	NCBI		Celera
Cytogenetic Map	1	q21.3	NCBI
HuRef	1	124,666,002 - 124,684,431 (-)	NCBI		HuRef
CHM1_1	1	154,698,355 - 154,716,780 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	1	152,467,338 - 152,486,071 (-)	NCBI		T2T-CHM13v2.0

Pglyrp4
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	3	90,634,008 - 90,648,824 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	3	90,634,213 - 90,648,824 (+)	Ensembl		GRCm39 Ensembl
GRCm38	3	90,726,906 - 90,741,517 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	3	90,726,906 - 90,741,517 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	3	90,530,828 - 90,545,439 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	3	90,812,879 - 90,826,437 (+)	NCBI		MGSCv36	mm8
Celera	3	90,768,301 - 90,782,967 (+)	NCBI		Celera
Cytogenetic Map	3	F1	NCBI
cM Map	3	39.96	NCBI

Pglyrp4
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	178,500,238 - 178,669,328 (+)	NCBI		GRCr8
mRatBN7.2	2	176,202,654 - 176,322,859 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	176,218,519 - 176,242,251 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	2	183,366,868 - 183,388,270 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	2	181,389,129 - 181,410,531 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	2	175,988,969 - 176,010,345 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	2	190,125,655 - 190,204,230 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	190,125,693 - 190,148,265 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	2	209,561,162 - 209,583,187 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	2	183,015,945 - 183,038,181 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	2	182,966,023 - 182,988,287 (+)	NCBI
Celera	2	170,152,720 - 170,158,201 (+)	NCBI		Celera
Cytogenetic Map	2	q34	NCBI

PGLYRP4
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	96,488,860 - 96,507,602 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	96,224,504 - 96,243,317 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	128,681,726 - 128,700,275 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	132,310,256 - 132,329,013 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	132,310,256 - 132,329,013 (-)	Ensembl	panpan1.1		panPan2

PGLYRP4
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	4	96,243,118 - 96,261,495 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	4	96,243,174 - 96,247,517 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	4	105,054,893 - 105,059,236 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

PGLYRP4
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	20	10,406,242 - 10,422,989 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	20	10,405,138 - 10,422,625 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666038	9,873,349 - 9,892,073 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005414604	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013509967	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013509968	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013509969	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013509970	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013509971	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013509972	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013509973	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013509974	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AGCD01076300	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GBDI01104792	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSCLAT00000005046 ⟹ ENSCLAP00000004954

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955592	100,088 - 111,610 (+)	Ensembl

RefSeq Acc Id:

XM_005414604 ⟹ XP_005414661

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955592	100,025 - 111,609 (+)	NCBI

Sequence:

show sequence

TTTCCCAGGGAGGAGGGCCCCGGGCTTATTCACAGGGCGGGTCCTCAGGTGCTCTCAGCTCAAG
TCTGCTTTCACTCGAGCGCCTCTCAGTGATGTGGACATAGTCAGCTCCCAGCCTCAGACCCCTG
TCCTCCATTATCTGTTAGGGATCCAAGGTGTTCTCTCTGGGAAGCCAGAGCCCAAGGGCTTCCT
TCCCAAGGAGCGAGTTCCCTCTTAGTGTGAGGGAAAGCAAAGGCTAGAAGAGGAGGAGGAGGAG
AAAGAGAAGGAGGAGGAAACAGCTGAAGGAGGGGCAGGGCCTGGAAGTCAACTCTGAAGGGAGG
AGTGACCAGCCAATGCGGGGCAAGTGGACTGCACCCTGACCTACTGCGCCGGGACAGCACAGGG
TCCTCAGAAGTGGGATCCACTTTCCTCCCAATTCTACTGGGAAAGAGGGGGTCTCTGATACCCC
GCCAGTTCCCTCTAGTCACAGAGGCTTTCTGAAAAAGTCACACTGAAGTGGAATTCCCTTCCCA
ACAGAGGAACGAACCAAACCACTCACCCTCCCTCCCGAGGCCCTTGTCTAGGACAGACATTTGT
CTCAAGGTCCTGGGCTGGGACGGCACGGGCCAACAGGGCTGCTGACCACACTCCCCATTTGCTG
TCCCAGGACCACATGAGGATGCTGCCTTGGCTTCTTGTCTTCTCTGCTCTTAGCGTCCAAACCT
TGGGTGTTTCCTCATGGGACAAAACACAAGTGAAACAAGTGTCAAAGAGGCTGCAGAACCTGTT
TGAAAACATCTCCCAGTTCACCAAAAAAGGCAAACTGGGTCATAACGATATCTTCACAATGGTC
TCTCGCAAGGAGTGGGGAGCAGAAGCTGTAGGCTGCAGGTCTGCGCTGACCACACCAGTGGATG
TCCTTGTCACACACCACGTCCTTGGAATGGAGTGCCGCGACCAGACCGCCTGCAGTCAGAGGCT
GCGGGAACTGCAGTCCTATCATGTCCACAACAACAGCTGGTGTGACGTGGCCTACAACTTCCTG
GTCGGGGATGATGGCAGAGTGTATGAAGGTGTTGGCTGGAATATCGAAGGCCTGCATACCCAGG
GATACAATAATATCTCCCTGGGCATCGCCTTCTTTGGCACCAAGGAAGGCCATAGTCCCAGCCC
TGCAGCCCTGTCAGCCATGAAGGGCCTAATCTCCTATGCTATCCTAAAGAGCCACCTATCACCC
AGGTACATCCAGCCACTTTTTGTGGAAGGCGAAAACTGCCTGGTCCCCCCACAGAAGGCAAGCC
TGAAGAAAGCTTGCCCCAGCATTGTCCCACGGTCAGCTTGGAGGGCCAGGGTGGCGTACTGCCA
CAAGATGACCCTCCCTGCTAAGTATGTTATAATCCTTCACACGGGTGGGAGAACCTGTAGTGCG
GCTGAGGAGTGCCACCTACTGGTCCGAGACCTCCAATCCCTCTTCATGGACAAACACAAGAAGT
GTGACATTGGGTACAACTTCCTCGTGGGTCAGGATGGTGCTGTTTATGAAGGGGTGGGCTGGAA
TGTCCAAGGCTCCTCCACCCCTGGCTACAGTGACATTGCCCTGGGTATTGTCTTCATGGGCACC
TTCTCAGGCAGCCCACCCAATGCCACGGCGCTGGAGGCAGCCCAGGACCTGATCCAGTGTGCTG
TGGTCAAGGGGTACCTGGCCCCCAACTACCTGCTGCTGGGCCATAGGGACGTGGCTAACACTCT
GTCCCCTGGACAGGCTTTATACAACATCATCAAGACGTGGCCTCACTTCAAAAACTGAGGGCAG
CCTCCCCTCCTTCTGGGGCTGCTCTTCCCAGTGGGTCTCTGTCCTCACCTCCCACTTTGCTTAA
ACATCTATGTCCACCTCCTCTGCCAACTTTGTTCCAGGTTGGGATGATCATGTCCTTTCCTGCT
CACATCCTCCACCATCACCATCCCCAGATCCCCATAGCTGGGCATTTAAAGCCTCCTTGGGTCA
TCTCTCTCCTCACCTTCCTGTCCCCTGACCACCCATCAGCTTGGTCAGGTAAGACACACAGTAG
GCCCTGTCATACCTCTCTCTCCATTTGTAGCTGCCTGTGTGCCTGGGGTCCCGCCCCCTGCAGT
CTGCCGGGCAGCCCAGGCCCTCATCCGTCACCCAGGCCATGGTGCGCCCACCCCACCCCGCCTG
CTCACACATTATTGACTTGTGCAACTTTGGATGTTTCCCTTATTTAAAGCCTGTGATTGTTTAT
ACATGTCTGTTATAACTCCTGGATTGCAAGTTTCTCTAAGAAGCAGCCAAGTTTTATTCGTCAC
TGTGTCCTCAGTTTATGAGGAGTGCCTGGAATTTACTAGGTTCTTTAGATGTTTGTTGAAGAAA
TGGAAAAATAAATCAATGAATGGACCCTG

hide sequence

RefSeq Acc Id:

XM_013509967 ⟹ XP_013365421

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955592	100,026 - 111,609 (+)	NCBI

Sequence:

show sequence

TTCCCAGGGAGGAGGGCCCCGGGCTTATTCACAGGGCGGGTCCTCAGGTGCTCTCAGCTCAAGT
CTGCTTTCACTCGAGCGCCTCTCAGTGATGTGGACATAGTCAGCTCCCAGCCTCAGACCCCTGT
CCTCCATTATCTGTTAGGGATCCAAGGTGTTCTCTCTGGGAAGCCAGAGCCCAAGGGCTTCCTT
CCCAAGGAGCGAGTTCCCTCTTAGTGTGAGGGAAAGCAAAGGCTAGAAGAGGAGGAGGAGGAGA
AAGAGAAGGAGGAGGAAACAGCTGAAGGAGGGGCAGGGCCTGGAAGTCAACTCTGAAGGGAGGA
GTGACCAGCCAATGCGGGGCAAGTGGACTGCACCCTGACCTACTGCGCCGGGACAGCACAGGGT
CCTCAGGGCTGCTGACCACACTCCCCATTTGCTGTCCCAGGACCACATGAGGATGCTGCCTTGG
CTTCTTGTCTTCTCTGCTCTTAGCGTCCAAACCTTGGGTGTTTCCTCATGGGACAAAACACAAG
TGAAACAAGTGTCAAAGAGGCTGCAGAACCTGTTTGAAAACATCTCCCAGTTCACCAAAAAAGG
CAAACTGGGTCATAACGATATCTTCACAATGGTCTCTCGCAAGGAGTGGGGAGCAGAAGCTGTA
GGCTGCAGGTCTGCGCTGACCACACCAGTGGATGTCCTTGTCACACACCACGTCCTTGGAATGG
AGTGCCGCGACCAGACCGCCTGCAGTCAGAGGCTGCGGGAACTGCAGTCCTATCATGTCCACAA
CAACAGCTGGTGTGACGTGGCCTACAACTTCCTGGTCGGGGATGATGGCAGAGTGTATGAAGGT
GTTGGCTGGAATATCGAAGGCCTGCATACCCAGGGATACAATAATATCTCCCTGGGCATCGCCT
TCTTTGGCACCAAGGAAGGCCATAGTCCCAGCCCTGCAGCCCTGTCAGCCATGAAGGGCCTAAT
CTCCTATGCTATCCTAAAGAGCCACCTATCACCCAGGTACATCCAGCCACTTTTTGTGGAAGGC
GAAAACTGCCTGGTCCCCCCACAGAAGGCAAGCCTGAAGAAAGCTTGCCCCAGCATTGTCCCAC
GGTCAGCTTGGAGGGCCAGGGTGGCGTACTGCCACAAGATGACCCTCCCTGCTAAGTATGTTAT
AATCCTTCACACGGGTGGGAGAACCTGTAGTGCGGCTGAGGAGTGCCACCTACTGGTCCGAGAC
CTCCAATCCCTCTTCATGGACAAACACAAGAAGTGTGACATTGGGTACAACTTCCTCGTGGGTC
AGGATGGTGCTGTTTATGAAGGGGTGGGCTGGAATGTCCAAGGCTCCTCCACCCCTGGCTACAG
TGACATTGCCCTGGGTATTGTCTTCATGGGCACCTTCTCAGGCAGCCCACCCAATGCCACGGCG
CTGGAGGCAGCCCAGGACCTGATCCAGTGTGCTGTGGTCAAGGGGTACCTGGCCCCCAACTACC
TGCTGCTGGGCCATAGGGACGTGGCTAACACTCTGTCCCCTGGACAGGCTTTATACAACATCAT
CAAGACGTGGCCTCACTTCAAAAACTGAGGGCAGCCTCCCCTCCTTCTGGGGCTGCTCTTCCCA
GTGGGTCTCTGTCCTCACCTCCCACTTTGCTTAAACATCTATGTCCACCTCCTCTGCCAACTTT
GTTCCAGGTTGGGATGATCATGTCCTTTCCTGCTCACATCCTCCACCATCACCATCCCCAGATC
CCCATAGCTGGGCATTTAAAGCCTCCTTGGGTCATCTCTCTCCTCACCTTCCTGTCCCCTGACC
ACCCATCAGCTTGGTCAGGTAAGACACACAGTAGGCCCTGTCATACCTCTCTCTCCATTTGTAG
CTGCCTGTGTGCCTGGGGTCCCGCCCCCTGCAGTCTGCCGGGCAGCCCAGGCCCTCATCCGTCA
CCCAGGCCATGGTGCGCCCACCCCACCCCGCCTGCTCACACATTATTGACTTGTGCAACTTTGG
ATGTTTCCCTTATTTAAAGCCTGTGATTGTTTATACATGTCTGTTATAACTCCTGGATTGCAAG
TTTCTCTAAGAAGCAGCCAAGTTTTATTCGTCACTGTGTCCTCAGTTTATGAGGAGTGCCTGGA
ATTTACTAGGTTCTTTAGATGTTTGTTGAAGAAATGGAAAAATAAATCAATGAATGGACCCTG

hide sequence

RefSeq Acc Id:

XM_013509968 ⟹ XP_013365422

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955592	100,025 - 111,609 (+)	NCBI

Sequence:

show sequence

TTTCCCAGGGAGGAGGGCCCCGGGCTTATTCACAGGGCGGGTCCTCAGGTGCTCTCAGCTCAAG
TCTGCTTTCACTCGAGCGCCTCTCAGTGATGTGGACATAGTCAGCTCCCAGCCTCAGACCCCTG
TCCTCCATTATCTGTTAGGGATCCAAGGTGTTCTCTCTGGGAAGCCAGAGCCCAAGGGCTTCCT
TCCCAAGGAGCGAGTTCCCTCTTAGTGTGAGGGAAAGCAAAGGCTAGAAGAGGAGGAGGAGGAG
AAAGAGAAGGAGGAGGAAACAGCTGAAGGAGGGGCAGGGCCTGGAAGTCAACTCTGAAGGGAGG
AGTGACCAGCCAATGCGGGGCAAGTGGACTGCACCCTGACCTACTGCGCCGGGACAGCACAGGG
TCCTCAGGTATTTCTGAGTAAGTGGGATCCACTTTCCTCCCAATTCTACTGGGAAAGAGGGGGT
CTCTGATACCCCGCCAGTTCCCTCTAGTCACAGAGGCTTTCTGAAAAAGTCACACTGAAGTGGA
ATTCCCTTCCCAACAGAGGAACGAACCAAACCACTCACCCTCCCTCCCGAGGCCCTTGTCTAGG
ACAGACATTTGTCTCAAGGTCCTGGGCTGGGACGGCACGGGCCAACAGGGCTGCTGACCACACT
CCCCATTTGCTGTCCCAGGACCACATGAGGATGCTGCCTTGGCTTCTTGTCTTCTCTGCTCTTA
GCGTCCAAACCTTGGGTGTTTCCTCATGGGACAAAACACAAGTGAAACAAGTGTCAAAGAGGCT
GCAGAACCTGTTTGAAAACATCTCCCAGTTCACCAAAAAAGGCAAACTGGGTCATAACGATATC
TTCACAATGGTCTCTCGCAAGGAGTGGGGAGCAGAAGCTGTAGGCTGCAGGTCTGCGCTGACCA
CACCAGTGGATGTCCTTGTCACACACCACGTCCTTGGAATGGAGTGCCGCGACCAGACCGCCTG
CAGTCAGAGGCTGCGGGAACTGCAGTCCTATCATGTCCACAACAACAGCTGGTGTGACGTGGCC
TACAACTTCCTGGTCGGGGATGATGGCAGAGTGTATGAAGGTGTTGGCTGGAATATCGAAGGCC
TGCATACCCAGGGATACAATAATATCTCCCTGGGCATCGCCTTCTTTGGCACCAAGGAAGGCCA
TAGTCCCAGCCCTGCAGCCCTGTCAGCCATGAAGGGCCTAATCTCCTATGCTATCCTAAAGAGC
CACCTATCACCCAGGTACATCCAGCCACTTTTTGTGGAAGGCGAAAACTGCCTGGTCCCCCCAC
AGAAGGCAAGCCTGAAGAAAGCTTGCCCCAGCATTGTCCCACGGTCAGCTTGGAGGGCCAGGGT
GGCGTACTGCCACAAGATGACCCTCCCTGCTAAGTATGTTATAATCCTTCACACGGGTGGGAGA
ACCTGTAGTGCGGCTGAGGAGTGCCACCTACTGGTCCGAGACCTCCAATCCCTCTTCATGGACA
AACACAAGAAGTGTGACATTGGGTACAACTTCCTCGTGGGTCAGGATGGTGCTGTTTATGAAGG
GGTGGGCTGGAATGTCCAAGGCTCCTCCACCCCTGGCTACAGTGACATTGCCCTGGGTATTGTC
TTCATGGGCACCTTCTCAGGCAGCCCACCCAATGCCACGGCGCTGGAGGCAGCCCAGGACCTGA
TCCAGTGTGCTGTGGTCAAGGGGTACCTGGCCCCCAACTACCTGCTGCTGGGCCATAGGGACGT
GGCTAACACTCTGTCCCCTGGACAGGCTTTATACAACATCATCAAGACGTGGCCTCACTTCAAA
AACTGAGGGCAGCCTCCCCTCCTTCTGGGGCTGCTCTTCCCAGTGGGTCTCTGTCCTCACCTCC
CACTTTGCTTAAACATCTATGTCCACCTCCTCTGCCAACTTTGTTCCAGGTTGGGATGATCATG
TCCTTTCCTGCTCACATCCTCCACCATCACCATCCCCAGATCCCCATAGCTGGGCATTTAAAGC
CTCCTTGGGTCATCTCTCTCCTCACCTTCCTGTCCCCTGACCACCCATCAGCTTGGTCAGGTAA
GACACACAGTAGGCCCTGTCATACCTCTCTCTCCATTTGTAGCTGCCTGTGTGCCTGGGGTCCC
GCCCCCTGCAGTCTGCCGGGCAGCCCAGGCCCTCATCCGTCACCCAGGCCATGGTGCGCCCACC
CCACCCCGCCTGCTCACACATTATTGACTTGTGCAACTTTGGATGTTTCCCTTATTTAAAGCCT
GTGATTGTTTATACATGTCTGTTATAACTCCTGGATTGCAAGTTTCTCTAAGAAGCAGCCAAGT
TTTATTCGTCACTGTGTCCTCAGTTTATGAGGAGTGCCTGGAATTTACTAGGTTCTTTAGATGT
TTGTTGAAGAAATGGAAAAATAAATCAATGAATGGACCCTG

hide sequence

RefSeq Acc Id:

XM_013509969 ⟹ XP_013365423

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955592	100,025 - 111,609 (+)	NCBI

Sequence:

show sequence

TTTCCCAGGGAGGAGGGCCCCGGGCTTATTCACAGGGCGGGTCCTCAGGTGCTCTCAGCTCAAG
TCTGCTTTCACTCGAGCGCCTCTCAGTGATGTGGACATAGTCAGCTCCCAGCCTCAGACCCCTG
TCCTCCATTATCTGTTAGGGATCCAAGGTGTTCTCTCTGGGAAGCCAGAGCCCAAGGGCTTCCT
TCCCAAGGAGCGAGTTCCCTCTTAGTGTGAGGGAAAGCAAAGGCTAGAAGAGGAGGAGGAGGAG
AAAGAGAAGGAGGAGGAAACAGCTGAAGGAGGGGCAGGGCCTGGAAGTCAACTCTGAAGGGAGG
AGTGACCAGCCAATGCGGGGCAAGTGGACTGCACCCTGACCTACTGCGCCGGGACAGCACAGGG
TCCTCAGGTATTTCTGAGTGGCTGCTGACCACACTCCCCATTTGCTGTCCCAGGACCACATGAG
GATGCTGCCTTGGCTTCTTGTCTTCTCTGCTCTTAGCGTCCAAACCTTGGGTGTTTCCTCATGG
GACAAAACACAAGTGAAACAAGTGTCAAAGAGGCTGCAGAACCTGTTTGAAAACATCTCCCAGT
TCACCAAAAAAGGCAAACTGGGTCATAACGATATCTTCACAATGGTCTCTCGCAAGGAGTGGGG
AGCAGAAGCTGTAGGCTGCAGGTCTGCGCTGACCACACCAGTGGATGTCCTTGTCACACACCAC
GTCCTTGGAATGGAGTGCCGCGACCAGACCGCCTGCAGTCAGAGGCTGCGGGAACTGCAGTCCT
ATCATGTCCACAACAACAGCTGGTGTGACGTGGCCTACAACTTCCTGGTCGGGGATGATGGCAG
AGTGTATGAAGGTGTTGGCTGGAATATCGAAGGCCTGCATACCCAGGGATACAATAATATCTCC
CTGGGCATCGCCTTCTTTGGCACCAAGGAAGGCCATAGTCCCAGCCCTGCAGCCCTGTCAGCCA
TGAAGGGCCTAATCTCCTATGCTATCCTAAAGAGCCACCTATCACCCAGGTACATCCAGCCACT
TTTTGTGGAAGGCGAAAACTGCCTGGTCCCCCCACAGAAGGCAAGCCTGAAGAAAGCTTGCCCC
AGCATTGTCCCACGGTCAGCTTGGAGGGCCAGGGTGGCGTACTGCCACAAGATGACCCTCCCTG
CTAAGTATGTTATAATCCTTCACACGGGTGGGAGAACCTGTAGTGCGGCTGAGGAGTGCCACCT
ACTGGTCCGAGACCTCCAATCCCTCTTCATGGACAAACACAAGAAGTGTGACATTGGGTACAAC
TTCCTCGTGGGTCAGGATGGTGCTGTTTATGAAGGGGTGGGCTGGAATGTCCAAGGCTCCTCCA
CCCCTGGCTACAGTGACATTGCCCTGGGTATTGTCTTCATGGGCACCTTCTCAGGCAGCCCACC
CAATGCCACGGCGCTGGAGGCAGCCCAGGACCTGATCCAGTGTGCTGTGGTCAAGGGGTACCTG
GCCCCCAACTACCTGCTGCTGGGCCATAGGGACGTGGCTAACACTCTGTCCCCTGGACAGGCTT
TATACAACATCATCAAGACGTGGCCTCACTTCAAAAACTGAGGGCAGCCTCCCCTCCTTCTGGG
GCTGCTCTTCCCAGTGGGTCTCTGTCCTCACCTCCCACTTTGCTTAAACATCTATGTCCACCTC
CTCTGCCAACTTTGTTCCAGGTTGGGATGATCATGTCCTTTCCTGCTCACATCCTCCACCATCA
CCATCCCCAGATCCCCATAGCTGGGCATTTAAAGCCTCCTTGGGTCATCTCTCTCCTCACCTTC
CTGTCCCCTGACCACCCATCAGCTTGGTCAGGTAAGACACACAGTAGGCCCTGTCATACCTCTC
TCTCCATTTGTAGCTGCCTGTGTGCCTGGGGTCCCGCCCCCTGCAGTCTGCCGGGCAGCCCAGG
CCCTCATCCGTCACCCAGGCCATGGTGCGCCCACCCCACCCCGCCTGCTCACACATTATTGACT
TGTGCAACTTTGGATGTTTCCCTTATTTAAAGCCTGTGATTGTTTATACATGTCTGTTATAACT
CCTGGATTGCAAGTTTCTCTAAGAAGCAGCCAAGTTTTATTCGTCACTGTGTCCTCAGTTTATG
AGGAGTGCCTGGAATTTACTAGGTTCTTTAGATGTTTGTTGAAGAAATGGAAAAATAAATCAAT
GAATGGACCCTG

hide sequence

RefSeq Acc Id:

XM_013509970 ⟹ XP_013365424

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955592	100,024 - 111,609 (+)	NCBI

Sequence:

show sequence

CTTTCCCAGGGAGGAGGGCCCCGGGCTTATTCACAGGGCGGGTCCTCAGGTGCTCTCAGCTCAA
GTCTGCTTTCACTCGAGCGCCTCTCAGTGATGTGGACATAGTCAGCTCCCAGCCTCAGACCCCT
GTCCTCCATTATCTGTTAGGGATCCAAGGTGTTCTCTCTGGGAAGCCAGAGCCCAAGGGCTTCC
TTCCCAAGGAGCGAGTTCCCTCTTAGTGTGAGGGAAAGCAAAGGCTAGAAGAGGAGGAGGAGGA
GAAAGAGAAGGAGGAGGAAACAGCTGAAGGAGGGGCAGGGCCTGGAAGTCAACTCTGAAGGGAG
GAGTGACCAGCCAATGCGGGGCAAGTGGACTGCACCCTGACCTACTGCGCCGGGACAGCACAGG
GTCCTCAGAAGTGGGATCCACTTTCCTCCCAATTCTACTGGGAAAGAGGGGGTCTCTGATACCC
CGCCAGTTCCCTCTAGTCACAGAGGCTTTCTGAAAAAGTCACACTGAAGTGGAATTCCCTTCCC
AACAGAGGAACGAACCAAACCACTCACCCTCCCTCCCGAGGCCCTTGTCTAGGACAGACATTTG
TCTCAAGGTCCTGGGCTGGGACGGCACGGGCCAACAGGACCACATGAGGATGCTGCCTTGGCTT
CTTGTCTTCTCTGCTCTTAGCGTCCAAACCTTGGGTGTTTCCTCATGGGACAAAACACAAGTGA
AACAAGTGTCAAAGAGGCTGCAGAACCTGTTTGAAAACATCTCCCAGTTCACCAAAAAAGGCAA
ACTGGGTCATAACGATATCTTCACAATGGTCTCTCGCAAGGAGTGGGGAGCAGAAGCTGTAGGC
TGCAGGTCTGCGCTGACCACACCAGTGGATGTCCTTGTCACACACCACGTCCTTGGAATGGAGT
GCCGCGACCAGACCGCCTGCAGTCAGAGGCTGCGGGAACTGCAGTCCTATCATGTCCACAACAA
CAGCTGGTGTGACGTGGCCTACAACTTCCTGGTCGGGGATGATGGCAGAGTGTATGAAGGTGTT
GGCTGGAATATCGAAGGCCTGCATACCCAGGGATACAATAATATCTCCCTGGGCATCGCCTTCT
TTGGCACCAAGGAAGGCCATAGTCCCAGCCCTGCAGCCCTGTCAGCCATGAAGGGCCTAATCTC
CTATGCTATCCTAAAGAGCCACCTATCACCCAGGTACATCCAGCCACTTTTTGTGGAAGGCGAA
AACTGCCTGGTCCCCCCACAGAAGGCAAGCCTGAAGAAAGCTTGCCCCAGCATTGTCCCACGGT
CAGCTTGGAGGGCCAGGGTGGCGTACTGCCACAAGATGACCCTCCCTGCTAAGTATGTTATAAT
CCTTCACACGGGTGGGAGAACCTGTAGTGCGGCTGAGGAGTGCCACCTACTGGTCCGAGACCTC
CAATCCCTCTTCATGGACAAACACAAGAAGTGTGACATTGGGTACAACTTCCTCGTGGGTCAGG
ATGGTGCTGTTTATGAAGGGGTGGGCTGGAATGTCCAAGGCTCCTCCACCCCTGGCTACAGTGA
CATTGCCCTGGGTATTGTCTTCATGGGCACCTTCTCAGGCAGCCCACCCAATGCCACGGCGCTG
GAGGCAGCCCAGGACCTGATCCAGTGTGCTGTGGTCAAGGGGTACCTGGCCCCCAACTACCTGC
TGCTGGGCCATAGGGACGTGGCTAACACTCTGTCCCCTGGACAGGCTTTATACAACATCATCAA
GACGTGGCCTCACTTCAAAAACTGAGGGCAGCCTCCCCTCCTTCTGGGGCTGCTCTTCCCAGTG
GGTCTCTGTCCTCACCTCCCACTTTGCTTAAACATCTATGTCCACCTCCTCTGCCAACTTTGTT
CCAGGTTGGGATGATCATGTCCTTTCCTGCTCACATCCTCCACCATCACCATCCCCAGATCCCC
ATAGCTGGGCATTTAAAGCCTCCTTGGGTCATCTCTCTCCTCACCTTCCTGTCCCCTGACCACC
CATCAGCTTGGTCAGGTAAGACACACAGTAGGCCCTGTCATACCTCTCTCTCCATTTGTAGCTG
CCTGTGTGCCTGGGGTCCCGCCCCCTGCAGTCTGCCGGGCAGCCCAGGCCCTCATCCGTCACCC
AGGCCATGGTGCGCCCACCCCACCCCGCCTGCTCACACATTATTGACTTGTGCAACTTTGGATG
TTTCCCTTATTTAAAGCCTGTGATTGTTTATACATGTCTGTTATAACTCCTGGATTGCAAGTTT
CTCTAAGAAGCAGCCAAGTTTTATTCGTCACTGTGTCCTCAGTTTATGAGGAGTGCCTGGAATT
TACTAGGTTCTTTAGATGTTTGTTGAAGAAATGGAAAAATAAATCAATGAATGGACCCTG

hide sequence

RefSeq Acc Id:

XM_013509971 ⟹ XP_013365425

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955592	100,024 - 111,609 (+)	NCBI

Sequence:

show sequence

CTTTCCCAGGGAGGAGGGCCCCGGGCTTATTCACAGGGCGGGTCCTCAGGTGCTCTCAGCTCAA
GTCTGCTTTCACTCGAGCGCCTCTCAGTGATGTGGACATAGTCAGCTCCCAGCCTCAGACCCCT
GTCCTCCATTATCTGTTAGGGATCCAAGGTGTTCTCTCTGGGAAGCCAGAGCCCAAGGGCTTCC
TTCCCAAGGAGCGAGTTCCCTCTTAGTGTGAGGGAAAGCAAAGGCTAGAAGAGGAGGAGGAGGA
GAAAGAGAAGGAGGAGGAAACAGCTGAAGGAGGGGCAGGGCCTGGAAGTCAACTCTGAAGGGAG
GAGTGACCAGCCAATGCGGGGCAAGTGGACTGCACCCTGACCTACTGCGCCGGGACAGCACAGG
GTCCTCAGGACCACATGAGGATGCTGCCTTGGCTTCTTGTCTTCTCTGCTCTTAGCGTCCAAAC
CTTGGGTGTTTCCTCATGGGACAAAACACAAGTGAAACAAGTGTCAAAGAGGCTGCAGAACCTG
TTTGAAAACATCTCCCAGTTCACCAAAAAAGGCAAACTGGGTCATAACGATATCTTCACAATGG
TCTCTCGCAAGGAGTGGGGAGCAGAAGCTGTAGGCTGCAGGTCTGCGCTGACCACACCAGTGGA
TGTCCTTGTCACACACCACGTCCTTGGAATGGAGTGCCGCGACCAGACCGCCTGCAGTCAGAGG
CTGCGGGAACTGCAGTCCTATCATGTCCACAACAACAGCTGGTGTGACGTGGCCTACAACTTCC
TGGTCGGGGATGATGGCAGAGTGTATGAAGGTGTTGGCTGGAATATCGAAGGCCTGCATACCCA
GGGATACAATAATATCTCCCTGGGCATCGCCTTCTTTGGCACCAAGGAAGGCCATAGTCCCAGC
CCTGCAGCCCTGTCAGCCATGAAGGGCCTAATCTCCTATGCTATCCTAAAGAGCCACCTATCAC
CCAGGTACATCCAGCCACTTTTTGTGGAAGGCGAAAACTGCCTGGTCCCCCCACAGAAGGCAAG
CCTGAAGAAAGCTTGCCCCAGCATTGTCCCACGGTCAGCTTGGAGGGCCAGGGTGGCGTACTGC
CACAAGATGACCCTCCCTGCTAAGTATGTTATAATCCTTCACACGGGTGGGAGAACCTGTAGTG
CGGCTGAGGAGTGCCACCTACTGGTCCGAGACCTCCAATCCCTCTTCATGGACAAACACAAGAA
GTGTGACATTGGGTACAACTTCCTCGTGGGTCAGGATGGTGCTGTTTATGAAGGGGTGGGCTGG
AATGTCCAAGGCTCCTCCACCCCTGGCTACAGTGACATTGCCCTGGGTATTGTCTTCATGGGCA
CCTTCTCAGGCAGCCCACCCAATGCCACGGCGCTGGAGGCAGCCCAGGACCTGATCCAGTGTGC
TGTGGTCAAGGGGTACCTGGCCCCCAACTACCTGCTGCTGGGCCATAGGGACGTGGCTAACACT
CTGTCCCCTGGACAGGCTTTATACAACATCATCAAGACGTGGCCTCACTTCAAAAACTGAGGGC
AGCCTCCCCTCCTTCTGGGGCTGCTCTTCCCAGTGGGTCTCTGTCCTCACCTCCCACTTTGCTT
AAACATCTATGTCCACCTCCTCTGCCAACTTTGTTCCAGGTTGGGATGATCATGTCCTTTCCTG
CTCACATCCTCCACCATCACCATCCCCAGATCCCCATAGCTGGGCATTTAAAGCCTCCTTGGGT
CATCTCTCTCCTCACCTTCCTGTCCCCTGACCACCCATCAGCTTGGTCAGGTAAGACACACAGT
AGGCCCTGTCATACCTCTCTCTCCATTTGTAGCTGCCTGTGTGCCTGGGGTCCCGCCCCCTGCA
GTCTGCCGGGCAGCCCAGGCCCTCATCCGTCACCCAGGCCATGGTGCGCCCACCCCACCCCGCC
TGCTCACACATTATTGACTTGTGCAACTTTGGATGTTTCCCTTATTTAAAGCCTGTGATTGTTT
ATACATGTCTGTTATAACTCCTGGATTGCAAGTTTCTCTAAGAAGCAGCCAAGTTTTATTCGTC
ACTGTGTCCTCAGTTTATGAGGAGTGCCTGGAATTTACTAGGTTCTTTAGATGTTTGTTGAAGA
AATGGAAAAATAAATCAATGAATGGACCCTG

hide sequence

RefSeq Acc Id:

XM_013509972 ⟹ XP_013365426

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955592	100,022 - 110,963 (+)	NCBI

Sequence:

show sequence

TCCTTTCCCAGGGAGGAGGGCCCCGGGCTTATTCACAGGGCGGGTCCTCAGGTGCTCTCAGCTC
AAGTCTGCTTTCACTCGAGCGCCTCTCAGTGATGTGGACATAGTCAGCTCCCAGCCTCAGACCC
CTGTCCTCCATTATCTGTTAGGGATCCAAGGTGTTCTCTCTGGGAAGCCAGAGCCCAAGGGCTT
CCTTCCCAAGGAGCGAGTTCCCTCTTAGTGTGAGGGAAAGCAAAGGCTAGAAGAGGAGGAGGAG
GAGAAAGAGAAGGAGGAGGAAACAGCTGAAGGAGGGGCAGGGCCTGGAAGTCAACTCTGAAGGG
AGGAGTGACCAGCCAATGCGGGGCAAGTGGACTGCACCCTGACCTACTGCGCCGGGACAGCACA
GGGTCCTCAGGGCTGCTGACCACACTCCCCATTTGCTGTCCCAGGACCACATGAGGATGCTGCC
TTGGCTTCTTGTCTTCTCTGCTCTTAGCGTCCAAACCTTGGGTGTTTCCTCATGGGACAAAACA
CAAGTGAAACAAGTGTCAAAGAGGCTGCAGAACCTGTTTGAAAACATCTCCCAGTTCACCAAAA
AAGGCAAACTGGGTCATAACGATATCTTCACAATGGTCTCTCGCAAGGAGTGGGGAGCAGAAGC
TGTAGGCTGCAGGTCTGCGCTGACCACACCAGTGGATGTCCTTGTCACACACCACGTCCTTGGA
ATGGAGTGCCGCGACCAGACCGCCTGCAGTCAGAGGCTGCGGGAACTGCAGTCCTATCATGTCC
ACAACAACAGCTGGTGTGACGTGGCCTACAACTTCCTGGTCGGGGATGATGGCAGAGTGTATGA
AGGTGTTGGCTGGAATATCGAAGGCCTGCATACCCAGGGATACAATAATATCTCCCTGGGCATC
GCCTTCTTTGGCACCAAGGAAGGCCATAGTCCCAGCCCTGCAGCCCTGTCAGCCATGAAGGGCC
TAATCTCCTATGCTATCCTAAAGAGCCACCTATCACCCAGGTACATCCAGCCACTTTTTGTGGA
AGGCGAAAACTGCCTGGTCCCCCCACAGAAGGCAAGCCTGAAGAAAGCTTGCCCCAGCATTGTC
CCACGGTCAGCTTGGAGGGCCAGGGTGGCGTACTGCCACAAGATGACCCTCCCTGCTAAGTATG
TTATAATCCTTCACACGGGTGGGAGAACCTGTAGTGCGGCTGAGGAGTGCCACCTACTGGTCCG
AGACCTCCAATCCCTCTTCATGGACAAACACAAGAAGTGTGACATTGGGTACAAGCTGATCTCC
ATCTCCCCTCGTGGCCTTCCAGCTTCCTCGTGGGTCAGGATGGTGCTGTTTATGAAGGGGTGGG
CTGGAATGTCCAAGGCTCCTCCACCCCTGGCTACAGTGACATTGCCCTGGGTATTGTCTTCATG
GGCACCTTCTCAGGCAGCCCACCCAATGCCACGGCGCTGGAGGCAGCCCAGGACCTGATCCAGT
GTGCTGTGGTCAAGGGGTACCTGGCCCCCAACTACCTGCTGCTGGGCCATAGGGACGTGGCTAA
CACTCTGTCCCCTGGACAGGCTTTATACA

hide sequence

RefSeq Acc Id:

XM_013509973 ⟹ XP_013365427

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955592	100,025 - 111,609 (+)	NCBI

Sequence:

show sequence

TTTCCCAGGGAGGAGGGCCCCGGGCTTATTCACAGGGCGGGTCCTCAGGTGCTCTCAGCTCAAG
TCTGCTTTCACTCGAGCGCCTCTCAGTGATGTGGACATAGTCAGCTCCCAGCCTCAGACCCCTG
TCCTCCATTATCTGTTAGGGATCCAAGGTGTTCTCTCTGGGAAGCCAGAGCCCAAGGGCTTCCT
TCCCAAGGAGCGAGTTCCCTCTTAGTGTGAGGGAAAGCAAAGGCTAGAAGAGGAGGAGGAGGAG
AAAGAGAAGGAGGAGGAAACAGCTGAAGGAGGGGCAGGGCCTGGAAGTCAACTCTGAAGGGAGG
AGTGACCAGCCAATGCGGGGCAAGTGGACTGCACCCTGACCTACTGCGCCGGGACAGCACAGGG
TCCTCAGGTGTTTCCTCATGGGACAAAACACAAGTGAAACAAGTGTCAAAGAGGCTGCAGAACC
TGTTTGAAAACATCTCCCAGTTCACCAAAAAAGGCAAACTGGGTCATAACGATATCTTCACAAT
GGTCTCTCGCAAGGAGTGGGGAGCAGAAGCTGTAGGCTGCAGGTCTGCGCTGACCACACCAGTG
GATGTCCTTGTCACACACCACGTCCTTGGAATGGAGTGCCGCGACCAGACCGCCTGCAGTCAGA
GGCTGCGGGAACTGCAGTCCTATCATGTCCACAACAACAGCTGGTGTGACGTGGCCTACAACTT
CCTGGTCGGGGATGATGGCAGAGTGTATGAAGGTGTTGGCTGGAATATCGAAGGCCTGCATACC
CAGGGATACAATAATATCTCCCTGGGCATCGCCTTCTTTGGCACCAAGGAAGGCCATAGTCCCA
GCCCTGCAGCCCTGTCAGCCATGAAGGGCCTAATCTCCTATGCTATCCTAAAGAGCCACCTATC
ACCCAGGTACATCCAGCCACTTTTTGTGGAAGGCGAAAACTGCCTGGTCCCCCCACAGAAGGCA
AGCCTGAAGAAAGCTTGCCCCAGCATTGTCCCACGGTCAGCTTGGAGGGCCAGGGTGGCGTACT
GCCACAAGATGACCCTCCCTGCTAAGTATGTTATAATCCTTCACACGGGTGGGAGAACCTGTAG
TGCGGCTGAGGAGTGCCACCTACTGGTCCGAGACCTCCAATCCCTCTTCATGGACAAACACAAG
AAGTGTGACATTGGGTACAACTTCCTCGTGGGTCAGGATGGTGCTGTTTATGAAGGGGTGGGCT
GGAATGTCCAAGGCTCCTCCACCCCTGGCTACAGTGACATTGCCCTGGGTATTGTCTTCATGGG
CACCTTCTCAGGCAGCCCACCCAATGCCACGGCGCTGGAGGCAGCCCAGGACCTGATCCAGTGT
GCTGTGGTCAAGGGGTACCTGGCCCCCAACTACCTGCTGCTGGGCCATAGGGACGTGGCTAACA
CTCTGTCCCCTGGACAGGCTTTATACAACATCATCAAGACGTGGCCTCACTTCAAAAACTGAGG
GCAGCCTCCCCTCCTTCTGGGGCTGCTCTTCCCAGTGGGTCTCTGTCCTCACCTCCCACTTTGC
TTAAACATCTATGTCCACCTCCTCTGCCAACTTTGTTCCAGGTTGGGATGATCATGTCCTTTCC
TGCTCACATCCTCCACCATCACCATCCCCAGATCCCCATAGCTGGGCATTTAAAGCCTCCTTGG
GTCATCTCTCTCCTCACCTTCCTGTCCCCTGACCACCCATCAGCTTGGTCAGGTAAGACACACA
GTAGGCCCTGTCATACCTCTCTCTCCATTTGTAGCTGCCTGTGTGCCTGGGGTCCCGCCCCCTG
CAGTCTGCCGGGCAGCCCAGGCCCTCATCCGTCACCCAGGCCATGGTGCGCCCACCCCACCCCG
CCTGCTCACACATTATTGACTTGTGCAACTTTGGATGTTTCCCTTATTTAAAGCCTGTGATTGT
TTATACATGTCTGTTATAACTCCTGGATTGCAAGTTTCTCTAAGAAGCAGCCAAGTTTTATTCG
TCACTGTGTCCTCAGTTTATGAGGAGTGCCTGGAATTTACTAGGTTCTTTAGATGTTTGTTGAA
GAAATGGAAAAATAAATCAATGAATGGACCCTG

hide sequence

RefSeq Acc Id:

XM_013509974 ⟹ XP_013365428

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955592	100,023 - 111,609 (+)	NCBI

Sequence:

show sequence

CCTTTCCCAGGGAGGAGGGCCCCGGGCTTATTCACAGGGCGGGTCCTCAGGTGCTCTCAGCTCA
AGTCTGCTTTCACTCGAGCGCCTCTCAGTGATGTGGACATAGTCAGCTCCCAGCCTCAGACCCC
TGTCCTCCATTATCTGTTAGGGATCCAAGGTGTTCTCTCTGGGAAGCCAGAGCCCAAGGGCTTC
CTTCCCAAGGAGCGAGTTCCCTCTTAGTGTGAGGGAAAGCAAAGGCTAGAAGAGGAGGAGGAGG
AGAAAGAGAAGGAGGAGGAAACAGCTGAAGGAGGGGCAGGGCCTGGAAGTCAACTCTGAAGGGA
GGAGTGACCAGCCAATGCGGGGCAAGTGGACTGCACCCTGACCTACTGCGCCGGGACAGCACAG
GGTCCTCAGGTGTTTCCTCATGGGACAAAACACAAGTGAAACAAGTGTCAAAGAGGCTGCAGAA
CCTGTTTGAAAACATCTCCCAGTTCACCAAAAAAGGCAAACTGGGTCATAACGGGCTTTTACCA
CTACGGGGCCAATGCAGCGCCAACCGGCAAGTGCAACCCAGGAACTAATGTGGACCCTTGGGGC
AGAACGCACCAAGTGACATCCACGGTCCCCCGACAGATATCTTCACAATGGTCTCTCGCAAGGA
GTGGGGAGCAGAAGCTGTAGGCTGCAGGTCTGCGCTGACCACACCAGTGGATGTCCTTGTCACA
CACCACGTCCTTGGAATGGAGTGCCGCGACCAGACCGCCTGCAGTCAGAGGCTGCGGGAACTGC
AGTCCTATCATGTCCACAACAACAGCTGGTGTGACGTGGCCTACAACTTCCTGGTCGGGGATGA
TGGCAGAGTGTATGAAGGTGTTGGCTGGAATATCGAAGGCCTGCATACCCAGGGATACAATAAT
ATCTCCCTGGGCATCGCCTTCTTTGGCACCAAGGAAGGCCATAGTCCCAGCCCTGCAGCCCTGT
CAGCCATGAAGGGCCTAATCTCCTATGCTATCCTAAAGAGCCACCTATCACCCAGGTACATCCA
GCCACTTTTTGTGGAAGGCGAAAACTGCCTGGTCCCCCCACAGAAGGCAAGCCTGAAGAAAGCT
TGCCCCAGCATTGTCCCACGGTCAGCTTGGAGGGCCAGGGTGGCGTACTGCCACAAGATGACCC
TCCCTGCTAAGTATGTTATAATCCTTCACACGGGTGGGAGAACCTGTAGTGCGGCTGAGGAGTG
CCACCTACTGGTCCGAGACCTCCAATCCCTCTTCATGGACAAACACAAGAAGTGTGACATTGGG
TACAACTTCCTCGTGGGTCAGGATGGTGCTGTTTATGAAGGGGTGGGCTGGAATGTCCAAGGCT
CCTCCACCCCTGGCTACAGTGACATTGCCCTGGGTATTGTCTTCATGGGCACCTTCTCAGGCAG
CCCACCCAATGCCACGGCGCTGGAGGCAGCCCAGGACCTGATCCAGTGTGCTGTGGTCAAGGGG
TACCTGGCCCCCAACTACCTGCTGCTGGGCCATAGGGACGTGGCTAACACTCTGTCCCCTGGAC
AGGCTTTATACAACATCATCAAGACGTGGCCTCACTTCAAAAACTGAGGGCAGCCTCCCCTCCT
TCTGGGGCTGCTCTTCCCAGTGGGTCTCTGTCCTCACCTCCCACTTTGCTTAAACATCTATGTC
CACCTCCTCTGCCAACTTTGTTCCAGGTTGGGATGATCATGTCCTTTCCTGCTCACATCCTCCA
CCATCACCATCCCCAGATCCCCATAGCTGGGCATTTAAAGCCTCCTTGGGTCATCTCTCTCCTC
ACCTTCCTGTCCCCTGACCACCCATCAGCTTGGTCAGGTAAGACACACAGTAGGCCCTGTCATA
CCTCTCTCTCCATTTGTAGCTGCCTGTGTGCCTGGGGTCCCGCCCCCTGCAGTCTGCCGGGCAG
CCCAGGCCCTCATCCGTCACCCAGGCCATGGTGCGCCCACCCCACCCCGCCTGCTCACACATTA
TTGACTTGTGCAACTTTGGATGTTTCCCTTATTTAAAGCCTGTGATTGTTTATACATGTCTGTT
ATAACTCCTGGATTGCAAGTTTCTCTAAGAAGCAGCCAAGTTTTATTCGTCACTGTGTCCTCAG
TTTATGAGGAGTGCCTGGAATTTACTAGGTTCTTTAGATGTTTGTTGAAGAAATGGAAAAATAA
ATCAATGAATGGACCCTG

hide sequence

Protein Sequences


Protein RefSeqs	XP_005414661	(Get FASTA)	NCBI Sequence Viewer
	XP_013365421	(Get FASTA)	NCBI Sequence Viewer
	XP_013365422	(Get FASTA)	NCBI Sequence Viewer
	XP_013365423	(Get FASTA)	NCBI Sequence Viewer
	XP_013365424	(Get FASTA)	NCBI Sequence Viewer
	XP_013365425	(Get FASTA)	NCBI Sequence Viewer
	XP_013365426	(Get FASTA)	NCBI Sequence Viewer
	XP_013365427	(Get FASTA)	NCBI Sequence Viewer
	XP_013365428	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCLAP00000004954
	ENSCLAP00000004954.1

RefSeq Acc Id:	XP_005414661 ⟸ XM_005414604
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C2YKA8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MRMLPWLLVFSALSVQTLGVSSWDKTQVKQVSKRLQNLFENISQFTKKGKLGHNDIFTMVSRKE WGAEAVGCRSALTTPVDVLVTHHVLGMECRDQTACSQRLRELQSYHVHNNSWCDVAYNFLVGDD GRVYEGVGWNIEGLHTQGYNNISLGIAFFGTKEGHSPSPAALSAMKGLISYAILKSHLSPRYIQ PLFVEGENCLVPPQKASLKKACPSIVPRSAWRARVAYCHKMTLPAKYVIILHTGGRTCSAAEEC HLLVRDLQSLFMDKHKKCDIGYNFLVGQDGAVYEGVGWNVQGSSTPGYSDIALGIVFMGTFSGS PPNATALEAAQDLIQCAVVKGYLAPNYLLLGHRDVANTLSPGQALYNIIKTWPHFKN hide sequence

RefSeq Acc Id:

XP_013365426 ⟸ XM_013509972

- Peptide Label:

isoform X2

- Sequence:

show sequence

MRMLPWLLVFSALSVQTLGVSSWDKTQVKQVSKRLQNLFENISQFTKKGKLGHNDIFTMVSRKE
WGAEAVGCRSALTTPVDVLVTHHVLGMECRDQTACSQRLRELQSYHVHNNSWCDVAYNFLVGDD
GRVYEGVGWNIEGLHTQGYNNISLGIAFFGTKEGHSPSPAALSAMKGLISYAILKSHLSPRYIQ
PLFVEGENCLVPPQKASLKKACPSIVPRSAWRARVAYCHKMTLPAKYVIILHTGGRTCSAAEEC
HLLVRDLQSLFMDKHKKCDIGYKLISISPRGLPASSWVRMVLFMKGWAGMSKAPPPLATVTLPW
VLSSWAPSQAAHPMPRRWRQPRT

hide sequence

RefSeq Acc Id:

XP_013365428 ⟸ XM_013509974

- Peptide Label:

isoform X3

- Sequence:

show sequence

MVSRKEWGAEAVGCRSALTTPVDVLVTHHVLGMECRDQTACSQRLRELQSYHVHNNSWCDVAYN
FLVGDDGRVYEGVGWNIEGLHTQGYNNISLGIAFFGTKEGHSPSPAALSAMKGLISYAILKSHL
SPRYIQPLFVEGENCLVPPQKASLKKACPSIVPRSAWRARVAYCHKMTLPAKYVIILHTGGRTC
SAAEECHLLVRDLQSLFMDKHKKCDIGYNFLVGQDGAVYEGVGWNVQGSSTPGYSDIALGIVFM
GTFSGSPPNATALEAAQDLIQCAVVKGYLAPNYLLLGHRDVANTLSPGQALYNIIKTWPHFKN

hide sequence

RefSeq Acc Id:	XP_013365424 ⟸ XM_013509970
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C2YKA8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MRMLPWLLVFSALSVQTLGVSSWDKTQVKQVSKRLQNLFENISQFTKKGKLGHNDIFTMVSRKE WGAEAVGCRSALTTPVDVLVTHHVLGMECRDQTACSQRLRELQSYHVHNNSWCDVAYNFLVGDD GRVYEGVGWNIEGLHTQGYNNISLGIAFFGTKEGHSPSPAALSAMKGLISYAILKSHLSPRYIQ PLFVEGENCLVPPQKASLKKACPSIVPRSAWRARVAYCHKMTLPAKYVIILHTGGRTCSAAEEC HLLVRDLQSLFMDKHKKCDIGYNFLVGQDGAVYEGVGWNVQGSSTPGYSDIALGIVFMGTFSGS PPNATALEAAQDLIQCAVVKGYLAPNYLLLGHRDVANTLSPGQALYNIIKTWPHFKN hide sequence

RefSeq Acc Id:	XP_013365425 ⟸ XM_013509971
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C2YKA8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MRMLPWLLVFSALSVQTLGVSSWDKTQVKQVSKRLQNLFENISQFTKKGKLGHNDIFTMVSRKE WGAEAVGCRSALTTPVDVLVTHHVLGMECRDQTACSQRLRELQSYHVHNNSWCDVAYNFLVGDD GRVYEGVGWNIEGLHTQGYNNISLGIAFFGTKEGHSPSPAALSAMKGLISYAILKSHLSPRYIQ PLFVEGENCLVPPQKASLKKACPSIVPRSAWRARVAYCHKMTLPAKYVIILHTGGRTCSAAEEC HLLVRDLQSLFMDKHKKCDIGYNFLVGQDGAVYEGVGWNVQGSSTPGYSDIALGIVFMGTFSGS PPNATALEAAQDLIQCAVVKGYLAPNYLLLGHRDVANTLSPGQALYNIIKTWPHFKN hide sequence

RefSeq Acc Id:	XP_013365422 ⟸ XM_013509968
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C2YKA8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MRMLPWLLVFSALSVQTLGVSSWDKTQVKQVSKRLQNLFENISQFTKKGKLGHNDIFTMVSRKE WGAEAVGCRSALTTPVDVLVTHHVLGMECRDQTACSQRLRELQSYHVHNNSWCDVAYNFLVGDD GRVYEGVGWNIEGLHTQGYNNISLGIAFFGTKEGHSPSPAALSAMKGLISYAILKSHLSPRYIQ PLFVEGENCLVPPQKASLKKACPSIVPRSAWRARVAYCHKMTLPAKYVIILHTGGRTCSAAEEC HLLVRDLQSLFMDKHKKCDIGYNFLVGQDGAVYEGVGWNVQGSSTPGYSDIALGIVFMGTFSGS PPNATALEAAQDLIQCAVVKGYLAPNYLLLGHRDVANTLSPGQALYNIIKTWPHFKN hide sequence

RefSeq Acc Id:	XP_013365423 ⟸ XM_013509969
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C2YKA8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MRMLPWLLVFSALSVQTLGVSSWDKTQVKQVSKRLQNLFENISQFTKKGKLGHNDIFTMVSRKE WGAEAVGCRSALTTPVDVLVTHHVLGMECRDQTACSQRLRELQSYHVHNNSWCDVAYNFLVGDD GRVYEGVGWNIEGLHTQGYNNISLGIAFFGTKEGHSPSPAALSAMKGLISYAILKSHLSPRYIQ PLFVEGENCLVPPQKASLKKACPSIVPRSAWRARVAYCHKMTLPAKYVIILHTGGRTCSAAEEC HLLVRDLQSLFMDKHKKCDIGYNFLVGQDGAVYEGVGWNVQGSSTPGYSDIALGIVFMGTFSGS PPNATALEAAQDLIQCAVVKGYLAPNYLLLGHRDVANTLSPGQALYNIIKTWPHFKN hide sequence

RefSeq Acc Id:

XP_013365427 ⟸ XM_013509973

- Peptide Label:

isoform X3

- Sequence:

show sequence

MVSRKEWGAEAVGCRSALTTPVDVLVTHHVLGMECRDQTACSQRLRELQSYHVHNNSWCDVAYN
FLVGDDGRVYEGVGWNIEGLHTQGYNNISLGIAFFGTKEGHSPSPAALSAMKGLISYAILKSHL
SPRYIQPLFVEGENCLVPPQKASLKKACPSIVPRSAWRARVAYCHKMTLPAKYVIILHTGGRTC
SAAEECHLLVRDLQSLFMDKHKKCDIGYNFLVGQDGAVYEGVGWNVQGSSTPGYSDIALGIVFM
GTFSGSPPNATALEAAQDLIQCAVVKGYLAPNYLLLGHRDVANTLSPGQALYNIIKTWPHFKN

hide sequence

RefSeq Acc Id:	XP_013365421 ⟸ XM_013509967
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C2YKA8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MRMLPWLLVFSALSVQTLGVSSWDKTQVKQVSKRLQNLFENISQFTKKGKLGHNDIFTMVSRKE WGAEAVGCRSALTTPVDVLVTHHVLGMECRDQTACSQRLRELQSYHVHNNSWCDVAYNFLVGDD GRVYEGVGWNIEGLHTQGYNNISLGIAFFGTKEGHSPSPAALSAMKGLISYAILKSHLSPRYIQ PLFVEGENCLVPPQKASLKKACPSIVPRSAWRARVAYCHKMTLPAKYVIILHTGGRTCSAAEEC HLLVRDLQSLFMDKHKKCDIGYNFLVGQDGAVYEGVGWNVQGSSTPGYSDIALGIVFMGTFSGS PPNATALEAAQDLIQCAVVKGYLAPNYLLLGHRDVANTLSPGQALYNIIKTWPHFKN hide sequence

RefSeq Acc Id:

ENSCLAP00000004954 ⟸ ENSCLAT00000005046

Protein Domains

N-acetylmuramoyl-L-alanine amidase Peptidoglycan recognition protein family

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCLAG00000003515	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCLAT00000005046	ENTREZGENE
	ENSCLAT00000005046.1	UniProtKB/TrEMBL
Gene3D-CATH	3.40.80.10	UniProtKB/TrEMBL
InterPro	Amidase/PGRP_sf	UniProtKB/TrEMBL
	Amidase_domain	UniProtKB/TrEMBL
	PGRP	UniProtKB/TrEMBL
	PGRP_domain_met/bac	UniProtKB/TrEMBL
NCBI Gene	Pglyrp4	ENTREZGENE
PANTHER	PEPTIDOGLYCAN RECOGNITION PROTEIN 3	UniProtKB/TrEMBL
	PTHR11022	UniProtKB/TrEMBL
Pfam	Amidase_2	UniProtKB/TrEMBL
SMART	Ami_2	UniProtKB/TrEMBL
	PGRP	UniProtKB/TrEMBL
Superfamily-SCOP	SSF55846	UniProtKB/TrEMBL
UniProt	A0A8C2YKA8	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar