Rnf112 (ring finger protein 112) - Rat Genome Database

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Gene: Rnf112 (ring finger protein 112) Chinchilla lanigera
Analyze
Symbol: Rnf112
Name: ring finger protein 112
RGD ID: 8877596
Description: ENCODES a protein that exhibits GTP binding (ortholog); GTPase activity (ortholog); ubiquitin protein ligase activity (ortholog); INVOLVED IN embryonic brain development (ortholog); G1 to G0 transition involved in cell differentiation (ortholog); neuron differentiation (ortholog); ASSOCIATED WITH autistic disorder (ortholog); common variable immunodeficiency 2 (ortholog); genetic disease (ortholog); FOUND IN cell body (ortholog); cytoplasm (ortholog); endosome (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955467349,256 - 355,922 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955467349,703 - 355,922 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Rnf112
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955467349,256 - 355,922 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955467349,703 - 355,922 (-)NCBIChiLan1.0ChiLan1.0
RNF112
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381719,411,232 - 19,417,276 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1719,411,125 - 19,417,276 (+)EnsemblGRCh38hg38GRCh38
GRCh371719,314,545 - 19,320,589 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361719,255,116 - 19,261,181 (+)NCBINCBI36Build 36hg18NCBI36
Build 341719,255,229 - 19,261,179NCBI
Celera1716,727,296 - 16,733,394 (+)NCBICelera
Cytogenetic Map17p11.2NCBI
HuRef1718,694,050 - 18,700,147 (+)NCBIHuRef
CHM1_11719,323,239 - 19,329,336 (+)NCBICHM1_1
T2T-CHM13v2.01719,359,261 - 19,365,304 (+)NCBIT2T-CHM13v2.0
Rnf112
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391161,339,243 - 61,345,014 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1161,339,268 - 61,344,957 (-)EnsemblGRCm39 Ensembl
GRCm381161,448,417 - 61,454,188 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1161,448,442 - 61,454,131 (-)EnsemblGRCm38mm10GRCm38
MGSCv371161,261,944 - 61,267,388 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361161,264,637 - 61,270,081 (-)NCBIMGSCv36mm8
MGSCv361161,878,133 - 61,883,577 (-)NCBIMGSCv36mm8
Cytogenetic Map11B2NCBI
cM Map1137.96NCBI
Rnf112
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81046,620,602 - 46,655,745 (-)NCBIGRCr8
mRatBN7.21046,121,146 - 46,126,691 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1046,121,148 - 46,126,699 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1050,824,412 - 50,829,957 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01050,314,931 - 50,320,476 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01045,818,358 - 45,823,903 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01047,719,034 - 47,726,050 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1047,719,014 - 47,725,172 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01047,491,743 - 47,499,277 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41047,599,958 - 47,605,503 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11047,613,582 - 47,619,126 (-)NCBI
Celera1045,373,245 - 45,378,798 (-)NCBICelera
Cytogenetic Map10q22NCBI
RNF112
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21954,420,657 - 54,426,876 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11759,233,074 - 59,239,283 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01731,688,381 - 31,701,675 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11736,860,202 - 36,866,805 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1736,860,202 - 36,894,877 (-)Ensemblpanpan1.1panPan2
RNF112
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1540,792,049 - 40,798,534 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl540,793,107 - 40,806,073 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha540,933,257 - 40,939,715 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0540,899,694 - 40,906,152 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl540,899,694 - 40,913,767 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1540,868,052 - 40,874,510 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0540,814,840 - 40,821,295 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0541,006,920 - 41,013,378 (-)NCBIUU_Cfam_GSD_1.0
Rnf112
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560260,237,949 - 60,243,638 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936881343,604 - 349,848 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936881343,625 - 349,564 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RNF112
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1260,117,461 - 60,126,173 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11260,117,452 - 60,124,071 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
RNF112
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11617,996,532 - 18,002,842 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1617,996,915 - 18,001,716 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660592,848,553 - 2,856,753 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rnf112
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248495,699,839 - 5,706,826 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248495,698,937 - 5,706,316 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000012824   ⟹   ENSCLAP00000012676
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_004955467349,256 - 355,922 (-)Ensembl
RefSeq Acc Id: XM_005399266   ⟹   XP_005399323
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955467349,703 - 355,922 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005399323 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000012676
  ENSCLAP00000012676.1
Reference Protein Sequences
RefSeq Acc Id: XP_005399323   ⟸   XM_005399266
- UniProtKB: A0A8C2VHA0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000012676   ⟸   ENSCLAT00000012824
Protein Domains
GB1/RHD3-type G   RING-type


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000008759 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000012824 ENTREZGENE
  ENSCLAT00000012824.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.40.10 UniProtKB/TrEMBL
  3.40.50.300 UniProtKB/TrEMBL
InterPro G_GB1_RHD3_dom UniProtKB/TrEMBL
  Guanylate-bd_N UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
  Znf_C3HC4_RING-type UniProtKB/TrEMBL
  Znf_RING UniProtKB/TrEMBL
  Znf_RING/FYVE/PHD UniProtKB/TrEMBL
NCBI Gene Rnf112 ENTREZGENE
PANTHER GUANYLATE BINDING PROTEIN UniProtKB/TrEMBL
  RING FINGER PROTEIN 112 UniProtKB/TrEMBL
Pfam GBP UniProtKB/TrEMBL
  zf-C3HC4 UniProtKB/TrEMBL
PROSITE G_GB1_RHD3 UniProtKB/TrEMBL
  ZF_RING_2 UniProtKB/TrEMBL
SMART RING UniProtKB/TrEMBL
Superfamily-SCOP RING/U-box UniProtKB/TrEMBL
  SSF52540 UniProtKB/TrEMBL
UniProt A0A8C2VHA0 ENTREZGENE, UniProtKB/TrEMBL