Ggact (gamma-glutamylamine cyclotransferase) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Ggact (gamma-glutamylamine cyclotransferase) Chinchilla lanigera
Analyze
Symbol: Ggact
Name: gamma-glutamylamine cyclotransferase
RGD ID: 8876359
Description: ENCODES a protein that exhibits gamma-glutamylaminecyclotransferase activity (ortholog); INVOLVED IN cellular modified amino acid catabolic process (ortholog); ASSOCIATED WITH Anal Atresia, Hypospadias, and Penoscrotal Inversion (ortholog); holoprosencephaly (ortholog); holoprosencephaly 5 (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: gamma-glutamylaminecyclotransferase
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495540410,280,013 - 10,316,531 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISS annotations to Chinchilla, Squirrel, Bonobo and/or Dog genes from Human gene annotations

Genomics

Comparative Map Data
Ggact
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495540410,280,013 - 10,316,531 (+)NCBIChiLan1.0ChiLan1.0
GGACT
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3813100,530,180 - 100,588,789 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl13100,530,164 - 100,589,528 (-)EnsemblGRCh38hg38GRCh38
GRCh3713101,182,434 - 101,241,043 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361399,980,002 - 99,987,974 (-)NCBINCBI36hg18NCBI36
Celera1382,026,987 - 82,085,620 (-)NCBI
Cytogenetic Map13q32.3NCBI
HuRef1381,778,487 - 81,837,097 (-)NCBIHuRef
CHM1_113101,152,717 - 101,211,314 (-)NCBICHM1_1
T2T-CHM13v2.01399,745,466 - 99,804,072 (-)NCBI
Ggact
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3914123,128,272 - 123,150,901 (-)NCBIGRCm39mm39
GRCm39 Ensembl14123,053,635 - 123,151,169 (-)Ensembl
GRCm3814122,890,860 - 122,913,413 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl14122,816,223 - 122,913,757 (-)EnsemblGRCm38mm10GRCm38
MGSCv3714123,290,082 - 123,312,387 (-)NCBIGRCm37mm9NCBIm37
MGSCv3614122,026,054 - 122,048,315 (-)NCBImm8
Celera14121,449,204 - 121,471,425 (-)NCBICelera
Cytogenetic Map14E5NCBI
Ggact
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21599,969,246 - 99,998,343 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl1599,968,282 - 99,993,455 (-)Ensembl
Rnor_6.015109,307,683 - 109,336,779 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl15109,307,904 - 109,316,953 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.015112,688,790 - 112,716,622 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.415108,029,945 - 108,053,498 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.115108,045,724 - 108,069,278 (-)NCBI
Celera1598,739,747 - 98,763,312 (-)NCBICelera
Cytogenetic Map15q25NCBI
GGACT
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.113100,837,605 - 100,895,588 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl13100,839,483 - 100,839,944 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01381,678,715 - 81,757,024 (-)NCBIMhudiblu_PPA_v0panPan3
GGACT
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12250,429,066 - 50,471,624 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2250,429,190 - 50,470,657 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2250,209,180 - 50,251,705 (-)NCBI
ROS_Cfam_1.02250,871,064 - 50,913,818 (-)NCBI
ROS_Cfam_1.0 Ensembl2250,871,200 - 50,914,106 (-)Ensembl
UMICH_Zoey_3.12250,517,921 - 50,560,440 (-)NCBI
UNSW_CanFamBas_1.02250,554,164 - 50,596,796 (-)NCBI
UU_Cfam_GSD_1.02250,591,542 - 50,634,058 (-)NCBI
Ggact
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945185,782,552 - 185,824,920 (-)NCBI
SpeTri2.0NW_00493647210,127,305 - 10,167,543 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GGACT
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11169,287,685 - 69,349,540 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21176,548,815 - 76,611,833 (-)NCBISscrofa10.2Sscrofa10.2susScr3
GGACT
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1379,139,506 - 79,213,496 (-)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl379,157,780 - 79,158,241 (-)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604635,643,631 - 35,720,457 (-)NCBIVero_WHO_p1.0
Ggact
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462479310,677,662 - 10,690,034 (+)EnsemblHetGla_female_1.0hetGla2
HetGla 1.0NW_00462479310,655,447 - 10,691,334 (+)NCBIHetGla_female_1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_005374044   ⟹   XP_005374101
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540410,296,360 - 10,316,531 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005374045   ⟹   XP_005374102
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540410,296,360 - 10,316,531 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005374046   ⟹   XP_005374103
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540410,280,480 - 10,316,531 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005374047   ⟹   XP_005374104
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540410,280,958 - 10,316,531 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005374048   ⟹   XP_005374105
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540410,301,582 - 10,316,531 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005374049   ⟹   XP_005374106
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540410,286,425 - 10,316,531 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005374050   ⟹   XP_005374107
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540410,296,359 - 10,316,531 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005374051   ⟹   XP_005374108
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540410,286,423 - 10,316,531 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013516034   ⟹   XP_013371488
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540410,280,480 - 10,316,531 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013516040   ⟹   XP_013371494
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540410,280,013 - 10,316,531 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013516046   ⟹   XP_013371500
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540410,286,424 - 10,316,531 (+)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: XP_005374103   ⟸   XM_005374046
- Sequence:
RefSeq Acc Id: XP_005374104   ⟸   XM_005374047
- Sequence:
RefSeq Acc Id: XP_005374108   ⟸   XM_005374051
- Sequence:
RefSeq Acc Id: XP_005374106   ⟸   XM_005374049
- Sequence:
RefSeq Acc Id: XP_005374107   ⟸   XM_005374050
- Sequence:
RefSeq Acc Id: XP_005374102   ⟸   XM_005374045
- Sequence:
RefSeq Acc Id: XP_005374101   ⟸   XM_005374044
- Sequence:
RefSeq Acc Id: XP_005374105   ⟸   XM_005374048
- Sequence:
RefSeq Acc Id: XP_013371494   ⟸   XM_013516040
- Sequence:
RefSeq Acc Id: XP_013371488   ⟸   XM_013516034
- Sequence:
RefSeq Acc Id: XP_013371500   ⟸   XM_013516046
- Sequence:


Additional Information

Database Acc Id Source(s)
NCBI Gene Ggact ENTREZGENE