Zfyve16 (zinc finger FYVE-type containing 16) - Rat Genome Database

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Gene: Zfyve16 (zinc finger FYVE-type containing 16) Chinchilla lanigera
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Symbol: Zfyve16
Name: zinc finger FYVE-type containing 16
RGD ID: 8874795
Description: ENCODES a protein that exhibits 1-phosphatidylinositol binding (ortholog); phosphatidylinositol-3,4,5-trisphosphate binding (ortholog); INVOLVED IN endosomal transport (ortholog); protein targeting to lysosome (ortholog); PARTICIPATES IN Bone morphogenetic proteins signaling pathway; transforming growth factor-beta Smad dependent signaling pathway; ASSOCIATED WITH arteriovenous malformations of the brain (ortholog); dextrocardia (ortholog); Experimental Liver Cirrhosis (ortholog); FOUND IN cytosol (ortholog); early endosome (ortholog); intracellular membrane-bounded organelle (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: zinc finger FYVE domain-containing protein 16; zinc finger, FYVE domain containing 16
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495541829,353,276 - 29,403,336 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References


Genomics

Comparative Map Data
Zfyve16
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495541829,353,276 - 29,403,336 (-)NCBIChiLan1.0ChiLan1.0
ZFYVE16
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl580,408,013 - 80,483,379 (+)EnsemblGRCh38hg38GRCh38
GRCh38580,407,615 - 80,483,379 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37579,703,883 - 79,779,198 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36579,739,594 - 79,811,254 (+)NCBINCBI36hg18NCBI36
Build 34579,739,638 - 79,810,476NCBI
Celera575,605,155 - 75,676,813 (+)NCBI
Cytogenetic Map5q14.1NCBI
HuRef574,911,945 - 74,983,612 (+)NCBIHuRef
CHM1_1579,136,924 - 79,208,782 (+)NCBICHM1_1
Zfyve16
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391392,624,257 - 92,667,318 (-)NCBIGRCm39mm39
GRCm39 Ensembl1392,623,616 - 92,667,376 (-)Ensembl
GRCm381392,487,749 - 92,530,810 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1392,487,108 - 92,530,868 (-)EnsemblGRCm38mm10GRCm38
MGSCv371393,257,704 - 93,300,765 (-)NCBIGRCm37mm9NCBIm37
MGSCv361393,588,502 - 93,631,563 (-)NCBImm8
Celera1396,096,082 - 96,139,872 (-)NCBICelera
Cytogenetic Map13C3NCBI
Zfyve16
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2223,713,018 - 23,757,576 (-)NCBI
Rnor_6.0 Ensembl222,062,050 - 22,105,710 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0222,060,879 - 22,105,822 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0241,264,066 - 41,308,960 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4222,725,949 - 22,769,174 (-)NCBIRGSC3.4rn4RGSC3.4
Celera219,803,598 - 19,846,829 (-)NCBICelera
Cytogenetic Map2q12NCBI
ZFYVE16
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1535,107,699 - 35,182,606 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl535,111,723 - 35,183,028 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0534,837,410 - 34,910,416 (-)NCBIMhudiblu_PPA_v0panPan3
ZFYVE16
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1326,662,750 - 26,714,184 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl326,664,068 - 26,699,073 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha327,900,978 - 27,960,841 (-)NCBI
ROS_Cfam_1.0326,581,169 - 26,641,100 (-)NCBI
UMICH_Zoey_3.1326,523,973 - 26,581,294 (-)NCBI
UNSW_CanFamBas_1.0326,492,081 - 26,551,959 (-)NCBI
UU_Cfam_GSD_1.0326,778,831 - 26,830,351 (-)NCBI
Zfyve16
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213182,748,407 - 182,789,631 (-)NCBI
SpeTri2.0NW_0049365498,082,464 - 8,110,116 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZFYVE16
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl289,045,612 - 89,106,977 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1289,044,860 - 89,109,237 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2290,895,666 - 90,954,884 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ZFYVE16
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1474,579,573 - 74,644,331 (+)NCBI
ChlSab1.1 Ensembl474,579,982 - 74,644,784 (+)Ensembl
Vero_WHO_p1.0NW_02366604923,441,512 - 23,506,157 (+)NCBI
Zfyve16
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247431,339,650 - 1,383,883 (+)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_005382321   ⟹   XP_005382378
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541829,353,276 - 29,403,336 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013513018   ⟹   XP_013368472
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541829,353,276 - 29,403,336 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005382378 (Get FASTA)   NCBI Sequence Viewer  
  XP_013368472 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005382378   ⟸   XM_005382321
- Sequence:
RefSeq Acc Id: XP_013368472   ⟸   XM_013513018
- Sequence:


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000005457 ENTREZGENE
Ensembl Protein ENSCLAP00000007777 ENTREZGENE
Ensembl Transcript ENSCLAT00000007897 ENTREZGENE
NCBI Gene Zfyve16 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-03 Zfyve16  zinc finger FYVE-type containing 16    zinc finger, FYVE domain containing 16  Symbol and/or name change 5135510 APPROVED