Ccdc43 (coiled-coil domain containing 43)

Gene: Ccdc43 (coiled-coil domain containing 43) Chinchilla lanigera

Analyze

Symbol:

Ccdc43

Name:

coiled-coil domain containing 43

RGD ID:

8874737

Description:

ASSOCIATED WITH genetic disease (ortholog); FOUND IN cytosol (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

coiled-coil domain-containing protein 43

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

ChiLan1.0 - Chinchilla ChiLan1.0 Assembly

Position:

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955451	17,550,116 - 17,559,093 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955451	17,548,674 - 17,559,168 (-)	NCBI	ChiLan1.0	ChiLan1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Cellular Component

cytosol (ISO)

Molecular Function

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Transitive Annotation Pipeline	Automated assignment of GO, PW and RDO ISO annotations across species

Genomics

Comparative Map Data

Ccdc43
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955451	17,550,116 - 17,559,093 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955451	17,548,674 - 17,559,168 (-)	NCBI	ChiLan1.0	ChiLan1.0

CCDC43
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	17	44,677,440 - 44,689,776 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	17	44,673,069 - 44,689,779 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	17	42,754,808 - 42,767,144 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	17	40,110,331 - 40,122,691 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	17	39,465,309 - 39,477,668 (-)	NCBI		Celera
Cytogenetic Map	17	q21.31	NCBI
HuRef	17	38,519,655 - 38,532,015 (-)	NCBI		HuRef
CHM1_1	17	42,990,944 - 43,003,302 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	17	45,531,399 - 45,543,735 (-)	NCBI		T2T-CHM13v2.0

Ccdc43
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	102,575,510 - 102,595,829 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	11	102,575,512 - 102,588,608 (-)	Ensembl		GRCm39 Ensembl
GRCm38	11	102,684,684 - 102,697,948 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	102,684,686 - 102,697,782 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	11	102,546,002 - 102,559,039 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	11	102,500,778 - 102,513,815 (-)	NCBI		MGSCv36	mm8
Celera	11	114,395,161 - 114,408,187 (-)	NCBI		Celera
Cytogenetic Map	11	E1	NCBI
cM Map	11	66.48	NCBI

Ccdc43
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	88,150,672 - 88,162,863 (-)	NCBI		GRCr8
mRatBN7.2	10	87,650,554 - 87,662,788 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	87,650,556 - 87,662,818 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	10	92,687,019 - 92,699,211 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	92,152,725 - 92,164,911 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	87,546,051 - 87,558,240 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	90,644,993 - 90,658,241 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	90,644,995 - 90,657,185 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	10	90,434,922 - 90,447,114 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	10	91,801,178 - 91,813,365 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	10	91,817,053 - 91,827,736 (-)	NCBI
Celera	10	86,357,221 - 86,369,392 (-)	NCBI		Celera
Cytogenetic Map	10	q32.1	NCBI

CCDC43
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	19	20,221,388 - 20,233,991 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	17	22,192,571 - 22,205,178 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	17	12,710,551 - 12,723,195 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	17	12,886,114 - 12,898,642 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	17	12,886,362 - 12,897,222 (+)	Ensembl	panpan1.1		panPan2

CCDC43
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	9	18,783,462 - 18,793,545 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	9	18,783,426 - 18,815,555 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	9	18,168,701 - 18,178,576 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	9	19,477,609 - 19,487,707 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	9	19,477,579 - 19,487,700 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	9	18,331,044 - 18,340,883 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	9	18,512,952 - 18,522,833 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	9	18,670,470 - 18,680,350 (+)	NCBI		UU_Cfam_GSD_1.0

Ccdc43
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	18,104,304 - 18,120,292 (+)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936541	1,073,906 - 1,090,287 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CCDC43
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	12	18,640,278 - 18,654,212 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	12	18,640,229 - 18,649,731 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	12	18,944,640 - 18,953,776 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CCDC43
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	16	61,712,992 - 61,726,121 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	16	61,713,269 - 61,725,511 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666077	32,473,860 - 32,487,898 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Ccdc43
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624795	516,962 - 525,493 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624795	516,888 - 526,734 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005394533	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005394534	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AGCD01043759	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GBDJ01102972	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSCLAT00000024296 ⟹ ENSCLAP00000024064

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955451	17,550,116 - 17,559,093 (-)	Ensembl

RefSeq Acc Id:

ENSCLAT00000024297 ⟹ ENSCLAP00000024065

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955451	17,550,116 - 17,559,093 (-)	Ensembl

RefSeq Acc Id:

XM_005394533 ⟹ XP_005394590

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955451	17,548,674 - 17,559,168 (-)	NCBI

Sequence:

show sequence

TGCGCCTTGGCCCGCGGCGCGGCCGTCAGGCACTGCGGCGGGCGCCTCGAGGGCTAGTAGGACC
CCGGCCCCAAGATGGCGGCGCCCAGCGAGGCGGCCGCGGCTTCCTCCTGCCCGGGCGATGGCGG
TGGCGGGGGCTTCGGGTCCTGGCTGGATGGGCGTTTGGAGGCGCTGGGAGTGGACCGAGCCGTG
TATGGCGCCTACATCCTCGGCGTCCTGCAAGAGGAGGAGGAGGAGGAAAAGCTGGACGCTCTGC
AGTGCATCCTCTGTGCTTTCCTGGAAGAAGACTCCCTCCTTACCATCTGCAAAGAGATTGTGGG
ACGGTGGTCGGAATCTCAGAATGTTGTTCCCAAAGTGAAGAAAGAAGACGAGGTCCAGGCCATC
GCCACACTGATTGAGAAGCAGGCACAGATCGTGGTGAAACCTCGGGTGGTGTCAGAGGAGCAGC
GGCAGAGGAAGGCCGCCCTGCTGGCACAGTATGCTGATGTGACCGATGAGGAGGATGAACCAGA
CGAGAATGACGATTCCGGCGCTGGGGTAAATGCCGGTTCTGACAAATCTCTGTTCCGAAACACC
AACGTGGAAGATGTCCTCAGTGCTCGGAAACTGGAGCGGGACTCACTTCGGGATGAGTCCCAGA
GGAAGAAGGAACAGGACAAGCTACAGAGGGAGAGGGACAGACTAGCCAAGCAGGAACGCAAGGA
AAAGGAGAGGAAAAGGACACAGAGAGGGGAGCGGAAGCGGTAACCCCGGGTGGCTCTGCTCTCC
CCCGGCAGACCTCAAGCCGTGCTGGGTGTAAGAGGACTGAGCACCTCGGCGAAGGGTTTCTGCT
TTTGTTTACATGGTTAAAAGGAAAATCACAATCATCCTGTTACAATAGGTGTGTGTTTGGTGGT
GTGGGCAGTCACGTTACAGTCGATACTCTCTACCAAAGACCTGGAAGGGGGCAGCCTTTATATT
TTAATACCCAAGTCCCAGGCTCTTTAGCTCCTTTTTAAAAAAAAATCTTCCATGGATAAAGAGC
AGGATTCAGGAAGCTTAGTCAGGTTTGTCCTGAAGGAGCGAAGCCAGGACCCCTGCTCGGTGGT
GCGCAGTGGAGCACAGGCTGCTCTGGAGGTGATGTTTACCCCAAATGTAGCGGTCTCCGGCTAA
GCTGGAAAGCCCTGCTGAATCCAGAGTTGATAGTGTATGCCAGCAAACTAGAAAGAGGGCAGAC
TATTTGGTGAGGGAATGTTGTAGATTTGAGAATGTTTTTAAAGAAAGTTTCAGCTTACAGGAGA
AAAAAGTCTTTAAGTAGAGATAGTTACGCATTTTTCCTCACCTAGGCAGTGACTTTAAGAAGGA
AGAGTTGGTATTGTGTGCAAGGATATCCTTGTTAGCTAGATTTAACTTTTTATAATTGTGAATC
TCCCTGAGTAACAGTAGATTTTAATCCTGATTTGCCCTAAATCATGACTGATATGACTGCTAGT
TCCTGGTTTAGGGAAACTGGAGGAATTACCCTTGTAGGAAAAATGCTGGAACCCTGGTGACACA
GATTCTTAGGACAGCACTGGTCAGTGCCAAATGAACTCATCCAGTGGGCAACTGAGGGGTGAGG
CCTGGAAGTCAGAGGTTGCAGGGCTCTTCCTGCAGGTCACAGTCACAGCCACATCTGCTGCAGG
CTAGGCCCTTCCCTTGCTGGCTCCGGCAGAGCCACCAGGGCTCAGCAGACCACCACTCAGGAGC
TGGTCTGCCCACCTGGCTTTTTGGGCATGGTGCAAACTAAAATAGTTTTTACATTTTTAAAGAT
TATAAAGGAAACTAGGTGCGTCACAGGTTTGAGCCTAGCCTGGGAAACTTGGTGATTTAGCGAG
CCCCTGTCTCAAAATTTAAAGGACTGGGCATGTAGCTCAGTGCAAAGGCCCTAGGTTCAATCCC
TAGTACCGCAGGAAAAAAGAAAAGAAAAAGCATGATAGACCACAGGTGGCCTGTGAAACCTAAA
ATATTTACTATCTAGCTCTTGAAGAAAGTTTGCTGAGCTGTTTTATATCACTGCAAGATTAACA
AGATCTTTTACCTTTTGCAGAAGGTTTTTTAAAAAAGGCATGAATAAAGAAAAGGAGATATGTT
GCCTCTTCACAGTCCTATAACCATGGCATTGCAAAAATAATTACCTTTTTAAAAAAATAAACTT
TATTTAAATCATG

hide sequence

RefSeq Acc Id:

XM_005394534 ⟹ XP_005394591

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955451	17,550,133 - 17,559,168 (-)	NCBI

Sequence:

show sequence

TGCGCCTTGGCCCGCGGCGCGGCCGTCAGGCACTGCGGCGGGCGCCTCGAGGGCTAGTAGGACC
CCGGCCCCAAGATGGCGGCGCCCAGCGAGGCGGCCGCGGCTTCCTCCTGCCCGGGCGATGGCGG
TGGCGGGGGCTTCGGGTCCTGGCTGGATGGGCGTTTGGAGGCGCTGGGAGTGGACCGAGCCGTG
TATGGCGCCTACATCCTCGGCGTCCTGCAAGAGGAGGAGGAGGAGGAAAAGCTGGACGCTCTGC
AGTGCATCCTCTGTGCTTTCCTGGAAGAAGACTCCCTCCTTACCATCTGCAAAGAGATTGTGGG
ACGGTGGTCGGAATCTCAGAATGTTGTTCCCAAAGTGAAGAAAGAAGACGAGGTCCAGGCCATC
GCCACACTGATTGAGAAGCAGGCACAGATCGTGGTGAAACCTCGGGTGGTGTCAGAGGAGCAGC
GGCAGAGGAAGGCCGCCCTGCTGGCACAGTATGCTGATGTGACCGATGAGGAGGACTCTGTTCC
GAAACACCAACGTGGAAGATGTCCTCAGTGCTCGGAAACTGGAGCGGGACTCACTTCGGGATGA
GTCCCAGAGGAAGAAGGAACAGGACAAGCTACAGAGGGAGAGGGACAGACTAGCCAAGCAGGAA
CGCAAGGAAAAGGAGAGGAAAAGGACACAGAGAG

hide sequence

Protein Sequences


Protein RefSeqs	XP_005394590	(Get FASTA)	NCBI Sequence Viewer
	XP_005394591	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCLAP00000024064
	ENSCLAP00000024064.1
	ENSCLAP00000024065.1

RefSeq Acc Id:	XP_005394590 ⟸ XM_005394533
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C2W245 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAAPSEAAAASSCPGDGGGGGFGSWLDGRLEALGVDRAVYGAYILGVLQEEEEEEKLDALQCIL CAFLEEDSLLTICKEIVGRWSESQNVVPKVKKEDEVQAIATLIEKQAQIVVKPRVVSEEQRQRK AALLAQYADVTDEEDEPDENDDSGAGVNAGSDKSLFRNTNVEDVLSARKLERDSLRDESQRKKE QDKLQRERDRLAKQERKEKERKRTQRGERKR hide sequence

RefSeq Acc Id:	XP_005394591 ⟸ XM_005394534
- Peptide Label:	isoform X2
- Sequence:	show sequence MAAPSEAAAASSCPGDGGGGGFGSWLDGRLEALGVDRAVYGAYILGVLQEEEEEEKLDALQCIL CAFLEEDSLLTICKEIVGRWSESQNVVPKVKKEDEVQAIATLIEKQAQIVVKPRVVSEEQRQRK AALLAQYADVTDEEDSVPKHQRGRCPQCSETGAGLTSG hide sequence

RefSeq Acc Id:

ENSCLAP00000024064 ⟸ ENSCLAT00000024296

RefSeq Acc Id:

ENSCLAP00000024065 ⟸ ENSCLAT00000024297

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCLAG00000016525	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCLAT00000024296	ENTREZGENE
	ENSCLAT00000024296.1	UniProtKB/TrEMBL
	ENSCLAT00000024297.1	UniProtKB/TrEMBL
InterPro	CCDC43	UniProtKB/TrEMBL
NCBI Gene	Ccdc43	ENTREZGENE
PANTHER	COILED-COIL DOMAIN-CONTAINING PROTEIN 43	UniProtKB/TrEMBL
	PTHR31684	UniProtKB/TrEMBL
UniProt	A0A8C2W245	ENTREZGENE, UniProtKB/TrEMBL
	A0A8C2W265_CHILA	UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar