Clvs2 (clavesin 2) - Rat Genome Database

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Gene: Clvs2 (clavesin 2) Chinchilla lanigera
Analyze
Symbol: Clvs2
Name: clavesin 2
RGD ID: 8874092
Description: ENCODES a protein that exhibits phosphatidylinositol-3,5-bisphosphate binding (ortholog); INVOLVED IN lysosome organization (ortholog); ASSOCIATED WITH epilepsy (ortholog); genetic disease (ortholog); FOUND IN clathrin-coated vesicle (ortholog); endosome (ortholog); trans-Golgi network (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: clavesin-2
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554364,758,743 - 4,823,383 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554364,758,749 - 4,823,383 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Clvs2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554364,758,743 - 4,823,383 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554364,758,749 - 4,823,383 (+)NCBIChiLan1.0ChiLan1.0
CLVS2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh386122,996,235 - 123,072,925 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl6122,996,235 - 123,072,925 (+)EnsemblGRCh38hg38GRCh38
GRCh376123,317,380 - 123,394,070 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 366123,359,281 - 123,426,762 (+)NCBINCBI36Build 36hg18NCBI36
Celera6124,062,048 - 124,129,515 (+)NCBICelera
Cytogenetic Map6q22.31NCBI
HuRef6120,894,951 - 120,962,427 (+)NCBIHuRef
CHM1_16123,581,348 - 123,648,817 (+)NCBICHM1_1
T2T-CHM13v2.06124,184,248 - 124,261,165 (+)NCBIT2T-CHM13v2.0
Clvs2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391033,388,282 - 33,500,680 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1033,388,282 - 33,500,765 (-)EnsemblGRCm39 Ensembl
GRCm381033,512,286 - 33,624,684 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1033,512,286 - 33,624,769 (-)EnsemblGRCm38mm10GRCm38
MGSCv371033,232,140 - 33,344,406 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361033,201,750 - 33,314,016 (-)NCBIMGSCv36mm8
Celera1034,420,461 - 34,534,817 (-)NCBICelera
Cytogenetic Map10A4- B1NCBI
cM Map1018.62NCBI
Clvs2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8125,553,981 - 25,661,806 (+)NCBIGRCr8
mRatBN7.2123,735,660 - 23,842,685 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl123,735,272 - 23,842,692 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx123,507,180 - 23,534,942 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0129,506,888 - 29,534,672 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0123,704,238 - 23,732,022 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0125,173,089 - 25,217,625 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl125,173,242 - 25,296,927 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0126,631,832 - 26,677,841 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4124,279,841 - 24,309,821 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1124,282,808 - 24,393,034 (+)NCBI
Celera122,443,160 - 22,472,626 (+)NCBICelera
Cytogenetic Map1p12NCBI
CLVS2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v25142,991,128 - 143,072,736 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan16140,892,499 - 140,974,473 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v06120,784,849 - 120,858,655 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.16124,907,667 - 124,985,026 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl6124,907,667 - 124,975,839 (+)Ensemblpanpan1.1panPan2
CLVS2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1162,217,473 - 62,286,853 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl162,217,837 - 62,282,449 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha163,025,578 - 63,096,929 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0162,420,539 - 62,491,590 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl162,422,598 - 62,496,418 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1162,354,446 - 62,425,787 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0162,142,463 - 62,213,279 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0162,791,442 - 62,862,485 (+)NCBIUU_Cfam_GSD_1.0
Clvs2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404946113,139,246 - 113,212,531 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936802872,577 - 936,649 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936802872,224 - 936,660 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CLVS2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl139,682,689 - 39,752,486 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1139,680,741 - 39,755,398 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2143,889,759 - 43,979,654 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CLVS2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11350,743,405 - 50,816,387 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1350,749,014 - 50,815,951 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604023,041,383 - 23,113,693 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Clvs2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247988,219,329 - 8,302,061 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247988,219,972 - 8,302,159 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000020864   ⟹   ENSCLAP00000020666
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554364,758,743 - 4,823,383 (+)Ensembl
RefSeq Acc Id: XM_005389152   ⟹   XP_005389209
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554364,758,749 - 4,823,383 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005389209 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000020666
  ENSCLAP00000020666.1
Reference Protein Sequences
RefSeq Acc Id: XP_005389209   ⟸   XM_005389152
- UniProtKB: A0A8C2VU39 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000020666   ⟸   ENSCLAT00000020864
Protein Domains
CRAL-TRIO


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000014159 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000020864 ENTREZGENE
  ENSCLAT00000020864.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.525.10 UniProtKB/TrEMBL
  Alpha-tocopherol transfer UniProtKB/TrEMBL
  N-terminal domain of phosphatidylinositol transfer protein sec14p UniProtKB/TrEMBL
InterPro CRAL-TRIO_dom UniProtKB/TrEMBL
  CRAL-TRIO_dom_sf UniProtKB/TrEMBL
  CRAL/TRIO_N_dom UniProtKB/TrEMBL
  CRAL/TRIO_N_dom_sf UniProtKB/TrEMBL
NCBI Gene Clvs2 ENTREZGENE
PANTHER ALPHA-TOCOPHEROL TRANSFER PROTEIN-RELATED UniProtKB/TrEMBL
  PTHR10174:SF73 UniProtKB/TrEMBL
Pfam CRAL_TRIO UniProtKB/TrEMBL
  CRAL_TRIO_N UniProtKB/TrEMBL
PRINTS CRETINALDHBP UniProtKB/TrEMBL
PROSITE CRAL_TRIO UniProtKB/TrEMBL
SMART CRAL_TRIO_N UniProtKB/TrEMBL
  SEC14 UniProtKB/TrEMBL
Superfamily-SCOP SSF46938 UniProtKB/TrEMBL
  SSF52087 UniProtKB/TrEMBL
UniProt A0A8C2VU39 ENTREZGENE, UniProtKB/TrEMBL