Herpud1 (homocysteine inducible ER protein with ubiquitin like domain 1) - Rat Genome Database

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Gene: Herpud1 (homocysteine inducible ER protein with ubiquitin like domain 1) Chinchilla lanigera
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Symbol: Herpud1
Name: homocysteine inducible ER protein with ubiquitin like domain 1
RGD ID: 8873942
Description: ENCODES a protein that exhibits transmembrane transporter binding (ortholog); ubiquitin ligase-substrate adaptor activity (ortholog); INVOLVED IN cellular calcium ion homeostasis (ortholog); endoplasmic reticulum calcium ion homeostasis (ortholog); endoplasmic reticulum unfolded protein response (ortholog); ASSOCIATED WITH hereditary breast ovarian cancer syndrome (ortholog); Prostatic Neoplasms (ortholog); FOUND IN endoplasmic reticulum (ortholog); endoplasmic reticulum membrane (ortholog); endoplasmic reticulum quality control compartment (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543314,608,375 - 14,621,839 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495543314,609,275 - 14,621,774 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISS annotations to Chinchilla, Squirrel, Bonobo and/or Dog genes from Human gene annotations

Genomics

Comparative Map Data
Herpud1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543314,608,375 - 14,621,839 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495543314,609,275 - 14,621,774 (+)NCBIChiLan1.0ChiLan1.0
HERPUD1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381656,932,142 - 56,944,864 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl1656,932,142 - 56,944,864 (+)EnsemblGRCh38hg38GRCh38
GRCh371656,966,054 - 56,978,776 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361655,523,249 - 55,535,294 (+)NCBINCBI36Build 36hg18NCBI36
Build 341655,523,248 - 55,535,294NCBI
Celera1641,466,026 - 41,478,076 (+)NCBICelera
Cytogenetic Map16q13NCBI
HuRef1642,835,319 - 42,847,282 (+)NCBIHuRef
CHM1_11658,373,967 - 58,385,760 (+)NCBICHM1_1
T2T-CHM13v2.01662,728,473 - 62,741,195 (+)NCBIT2T-CHM13v2.0
Herpud1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39895,113,057 - 95,121,999 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl895,113,066 - 95,122,005 (+)EnsemblGRCm39 Ensembl
GRCm38894,386,429 - 94,395,371 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl894,386,438 - 94,395,377 (+)EnsemblGRCm38mm10GRCm38
MGSCv37896,910,400 - 96,919,258 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36897,275,629 - 97,284,487 (+)NCBIMGSCv36mm8
Celera898,718,356 - 98,727,224 (+)NCBICelera
Cytogenetic Map8C5NCBI
Herpud1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21910,598,411 - 10,609,002 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1910,598,417 - 10,618,424 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1910,561,735 - 10,572,117 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.01911,328,571 - 11,338,953 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.01910,615,556 - 10,625,938 (-)NCBIRnor_WKY
Rnor_6.01911,046,905 - 11,057,440 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1911,046,909 - 11,057,254 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01911,027,622 - 11,038,305 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41911,036,567 - 11,046,914 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11911,041,392 - 11,051,740 (-)NCBI
Celera1910,486,005 - 10,496,352 (-)NCBICelera
Cytogenetic Map19p13NCBI
HERPUD1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11656,343,025 - 56,355,164 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1656,343,025 - 56,355,164 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01637,210,170 - 37,221,961 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
HERPUD1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1259,388,492 - 59,400,028 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl259,388,494 - 59,400,003 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha256,017,333 - 56,028,868 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0259,927,541 - 59,939,082 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl259,927,546 - 59,939,082 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1256,758,736 - 56,770,263 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0257,766,037 - 57,777,356 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0258,660,262 - 58,671,800 (-)NCBIUU_Cfam_GSD_1.0
Herpud1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934950,486,978 - 50,497,944 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049364759,091,115 - 9,102,101 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
HERPUD1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl618,901,297 - 18,913,424 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1618,901,171 - 18,913,427 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
HERPUD1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1542,877,812 - 42,889,576 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl542,877,781 - 42,890,298 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604733,458,778 - 33,470,865 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Herpud1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474629,068,350 - 29,081,085 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474629,069,995 - 29,081,085 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000006416   ⟹   ENSCLAP00000006311
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495543314,608,375 - 14,621,839 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000006417   ⟹   ENSCLAP00000006312
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495543314,613,929 - 14,621,501 (+)Ensembl
RefSeq Acc Id: XM_005388367   ⟹   XP_005388424
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495543314,609,429 - 14,621,774 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005388368   ⟹   XP_005388425
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495543314,609,275 - 14,621,774 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013516271   ⟹   XP_013371725
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495543314,610,736 - 14,621,774 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013516273   ⟹   XP_013371727
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495543314,610,731 - 14,621,774 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005388424 (Get FASTA)   NCBI Sequence Viewer  
  XP_005388425 (Get FASTA)   NCBI Sequence Viewer  
  XP_013371725 (Get FASTA)   NCBI Sequence Viewer  
  XP_013371727 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005388425   ⟸   XM_005388368
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_005388424   ⟸   XM_005388367
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_013371727   ⟸   XM_013516273
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_013371725   ⟸   XM_013516271
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: ENSCLAP00000006312   ⟸   ENSCLAT00000006417
RefSeq Acc Id: ENSCLAP00000006311   ⟸   ENSCLAT00000006416
Protein Domains
Ubiquitin-like


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000004466 Ensembl, UniProtKB/TrEMBL
Ensembl Protein ENSCLAP00000006311.1 UniProtKB/TrEMBL
  ENSCLAP00000006312.1 UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000006416.1 UniProtKB/TrEMBL
  ENSCLAT00000006417.1 UniProtKB/TrEMBL
InterPro HERPUD1/2 UniProtKB/TrEMBL
  Ubiquitin-like_dom UniProtKB/TrEMBL
  Ubiquitin-like_domsf UniProtKB/TrEMBL
NCBI Gene Herpud1 ENTREZGENE
PANTHER PTHR12943 UniProtKB/TrEMBL
Pfam ubiquitin UniProtKB/TrEMBL
PROSITE UBIQUITIN_2 UniProtKB/TrEMBL
SMART UBQ UniProtKB/TrEMBL
Superfamily-SCOP SSF54236 UniProtKB/TrEMBL
UniProt A0A8C2UWF4_CHILA UniProtKB/TrEMBL
  A0A8C2YKZ1_CHILA UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-03 Herpud1  homocysteine inducible ER protein with ubiquitin like domain 1    homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1  Symbol and/or name change 5135510 APPROVED