Kiaa0825 (KIAA0825 ortholog) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Kiaa0825 (KIAA0825 ortholog) Chinchilla lanigera
Analyze
Symbol: Kiaa0825
Name: KIAA0825 ortholog
RGD ID: 8873755
Description: ASSOCIATED WITH Bosch-Boonstra-Schaaf optic atrophy syndrome (ortholog); familial adenomatous polyposis 1 (ortholog); Hereditary Neoplastic Syndromes (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: uncharacterized protein KIAA0825 homolog
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541817,851,078 - 17,995,990 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541817,818,641 - 18,203,402 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References


Genomics

Comparative Map Data
Kiaa0825
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541817,851,078 - 17,995,990 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541817,818,641 - 18,203,402 (+)NCBIChiLan1.0ChiLan1.0
KIAA0825
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl594,150,851 - 94,618,604 (-)EnsemblGRCh38hg38GRCh38
GRCh38594,150,851 - 94,618,604 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37593,486,556 - 93,954,309 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36593,880,919 - 93,980,040 (-)NCBINCBI36hg18NCBI36
Celera589,346,774 - 89,816,202 (-)NCBI
Cytogenetic Map5q15NCBI
HuRef588,659,548 - 89,127,582 (-)NCBIHuRef
CHM1_1592,919,534 - 93,386,938 (-)NCBICHM1_1
2210408I21Rik
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391377,283,636 - 77,761,798 (+)NCBIGRCm39mm39
GRCm39 Ensembl1377,283,659 - 77,761,903 (+)Ensembl
GRCm381377,135,531 - 77,613,785 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1377,135,540 - 77,613,784 (+)EnsemblGRCm38mm10GRCm38
MGSCv371377,274,797 - 77,752,940 (+)NCBIGRCm37mm9NCBIm37
MGSCv361377,599,083 - 78,076,838 (+)NCBImm8
Celera1379,463,325 - 79,920,002 (+)NCBICelera
Cytogenetic Map13C1NCBI
RGD1560883
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.226,874,474 - 7,437,032 (+)NCBImRatBN7.2
Rnor_6.0 Ensembl24,195,917 - 4,754,318 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.024,195,871 - 4,755,065 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.024,193,792 - 4,735,075 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.424,529,886 - 4,659,597 (+)NCBIRGSC3.4rn4RGSC3.4
Celera23,326,273 - 3,884,737 (+)NCBICelera
Cytogenetic Map2q11NCBI
KIAA0825
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1520,894,477 - 21,353,552 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl520,930,543 - 21,352,509 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0520,755,995 - 21,216,208 (+)NCBIMhudiblu_PPA_v0panPan3
KIAA0825
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1314,868,609 - 15,251,247 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl314,893,203 - 15,249,730 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha316,207,450 - 16,588,002 (+)NCBI
ROS_Cfam_1.0314,796,918 - 15,135,637 (+)NCBI
UMICH_Zoey_3.1314,711,657 - 15,011,407 (+)NCBI
UNSW_CanFamBas_1.0314,710,159 - 15,090,916 (+)NCBI
UU_Cfam_GSD_1.0314,913,859 - 15,296,241 (+)NCBI
Kiaa0825
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213170,449,148 - 170,830,022 (+)NCBI
SpeTri2.0NW_0049365238,634,617 - 9,015,742 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
KIAA0825
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl2100,934,424 - 101,291,935 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.12100,935,165 - 101,291,983 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.22104,714,898 - 104,739,896 (-)NCBISscrofa10.2Sscrofa10.2susScr3
KIAA0825
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1488,018,026 - 88,499,287 (-)NCBI
ChlSab1.1 Ensembl488,238,022 - 88,422,215 (-)Ensembl
Vero_WHO_p1.0NW_02366624023,272 - 104,913 (+)NCBI
Kiaa0825
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462474312,945,095 - 13,327,509 (-)NCBI


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005382250 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005382253 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005382254 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005382255 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005382256 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005382257 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005382258 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013512985 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AGCD01019158 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01019159 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01019160 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01019161 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01019162 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01019163 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01019164 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01019165 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GBBH01015832 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSCLAT00000007682   ⟹   ENSCLAP00000007565
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495541817,851,078 - 17,995,990 (+)Ensembl
RefSeq Acc Id: XM_005382250   ⟹   XP_005382307
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541817,818,641 - 18,203,402 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005382253   ⟹   XP_005382310
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541817,818,641 - 18,013,837 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005382254   ⟹   XP_005382311
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541817,818,641 - 18,090,904 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005382255   ⟹   XP_005382312
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541817,818,641 - 18,116,120 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005382256   ⟹   XP_005382313
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541817,818,641 - 18,060,359 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005382257   ⟹   XP_005382314
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541817,818,641 - 18,100,568 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005382258   ⟹   XP_005382315
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541817,818,641 - 17,993,929 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013512985   ⟹   XP_013368439
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541817,818,641 - 18,138,445 (+)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: XP_005382307   ⟸   XM_005382250
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_005382312   ⟸   XM_005382255
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_005382314   ⟸   XM_005382257
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: XP_005382311   ⟸   XM_005382254
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_005382313   ⟸   XM_005382256
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_005382310   ⟸   XM_005382253
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_005382315   ⟸   XM_005382258
- Peptide Label: isoform X8
- Sequence:
RefSeq Acc Id: XP_013368439   ⟸   XM_013512985
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: ENSCLAP00000007565   ⟸   ENSCLAT00000007682


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000005311 Ensembl, ENTREZGENE
Ensembl Protein ENSCLAP00000007565 ENTREZGENE
Ensembl Transcript ENSCLAT00000007682 ENTREZGENE
NCBI Gene Kiaa0825 ENTREZGENE