Txlnb (taxilin beta) - Rat Genome Database

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Gene: Txlnb (taxilin beta) Chinchilla lanigera
Analyze
Symbol: Txlnb
Name: taxilin beta
RGD ID: 8873709
Description: ASSOCIATED WITH Familial Behcet-Like Autoinflammatory Syndrome (ortholog); FOUND IN cytoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: beta-taxilin
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543620,445,205 - 20,482,523 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495543620,442,605 - 20,481,758 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Txlnb
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543620,445,205 - 20,482,523 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495543620,442,605 - 20,481,758 (+)NCBIChiLan1.0ChiLan1.0
TXLNB
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh386139,159,162 - 139,323,950 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl6139,239,083 - 139,291,998 (-)EnsemblGRCh38hg38GRCh38
GRCh376139,561,198 - 139,613,135 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 366139,602,891 - 139,654,849 (-)NCBINCBI36Build 36hg18NCBI36
Build 346139,602,893 - 139,654,849NCBI
Celera6140,301,267 - 140,353,271 (-)NCBICelera
Cytogenetic Map6q24.1NCBI
HuRef6137,122,735 - 137,174,737 (-)NCBIHuRef
CHM1_16139,824,342 - 139,876,297 (-)NCBICHM1_1
T2T-CHM13v2.06140,347,705 - 140,507,844 (-)NCBIT2T-CHM13v2.0
Txlnb
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391017,671,967 - 17,721,411 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1017,671,974 - 17,721,413 (+)EnsemblGRCm39 Ensembl
GRCm381017,796,219 - 17,845,663 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1017,796,226 - 17,845,665 (+)EnsemblGRCm38mm10GRCm38
MGSCv371017,516,025 - 17,565,469 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361017,485,696 - 17,535,079 (+)NCBIMGSCv36mm8
Celera1017,679,390 - 17,728,131 (+)NCBICelera
Cytogenetic Map10A2NCBI
cM Map107.24NCBI
Txlnb
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8114,224,647 - 14,269,837 (+)NCBIGRCr8
mRatBN7.2112,404,845 - 12,449,977 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl112,404,859 - 12,449,975 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx112,167,527 - 12,213,188 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0118,169,452 - 18,215,113 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0112,385,196 - 12,430,312 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0112,915,781 - 12,961,680 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl112,915,734 - 12,961,670 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0114,609,469 - 14,655,264 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4112,814,809 - 12,857,077 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1112,753,057 - 12,856,515 (+)NCBI
Celera110,862,671 - 10,907,830 (+)NCBICelera
Cytogenetic Map1p12NCBI
TXLNB
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v25159,208,553 - 159,293,118 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan16157,102,881 - 157,186,505 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v06137,002,343 - 137,086,487 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.16141,083,798 - 141,133,794 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl6141,084,075 - 141,130,691 (-)Ensemblpanpan1.1panPan2
TXLNB
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1131,417,182 - 31,464,674 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl131,417,538 - 31,464,624 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha132,288,265 - 32,338,086 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0131,575,856 - 31,625,741 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl131,575,904 - 31,625,667 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1131,451,654 - 31,501,470 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0131,334,143 - 31,384,048 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0131,645,609 - 31,695,514 (-)NCBIUU_Cfam_GSD_1.0
Txlnb
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404946126,472,022 - 126,513,407 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365606,251,213 - 6,292,598 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365606,253,195 - 6,292,556 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TXLNB
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl125,228,615 - 25,285,301 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1125,228,602 - 25,285,303 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2128,367,688 - 28,425,410 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TXLNB
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11334,099,200 - 34,151,823 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1334,099,435 - 34,151,823 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660406,241,641 - 6,291,264 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Txlnb
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475314,712,569 - 14,761,243 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475314,712,618 - 14,759,830 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSCLAT00000012166   ⟹   ENSCLAP00000012025
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495543620,445,205 - 20,482,523 (+)Ensembl
RefSeq Acc Id: XM_005389259   ⟹   XP_005389316
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495543620,442,605 - 20,481,758 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005389316 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000012025
  ENSCLAP00000012025.1
RefSeq Acc Id: XP_005389316   ⟸   XM_005389259
- UniProtKB: A0A8C2YNP0 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSCLAP00000012025   ⟸   ENSCLAT00000012166


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000008298 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000012166 ENTREZGENE
  ENSCLAT00000012166.1 UniProtKB/TrEMBL
InterPro Taxilin_fam UniProtKB/TrEMBL
NCBI Gene Txlnb ENTREZGENE
PANTHER BETA-TAXILIN UniProtKB/TrEMBL
  PTHR16127 UniProtKB/TrEMBL
Pfam Taxilin UniProtKB/TrEMBL
UniProt A0A8C2YNP0 ENTREZGENE, UniProtKB/TrEMBL