LOC102026964 (chromosome unknown open reading frame, human C2orf49) - Rat Genome Database

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Gene: LOC102026964 (chromosome unknown open reading frame, human C2orf49) Chinchilla lanigera
Analyze
Symbol: LOC102026964
Name: chromosome unknown open reading frame, human C2orf49
RGD ID: 8872531
Description: ASSOCIATED WITH arrhythmogenic right ventricular cardiomyopathy (ortholog); cardiomyopathy (ortholog); dilated cardiomyopathy (ortholog); FOUND IN nucleus (ortholog); tRNA-splicing ligase complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ashwin
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495547010,223,467 - 10,234,309 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495547010,223,467 - 10,234,309 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References


Genomics

Comparative Map Data
LOC102026964
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495547010,223,467 - 10,234,309 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495547010,223,467 - 10,234,309 (+)NCBIChiLan1.0ChiLan1.0
C2orf49
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382105,337,540 - 105,385,899 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl2105,337,532 - 105,349,211 (+)EnsemblGRCh38hg38GRCh38
GRCh372105,953,997 - 105,965,668 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362105,320,445 - 105,328,416 (+)NCBINCBI36hg18NCBI36
Celera2100,154,460 - 100,162,431 (+)NCBI
Cytogenetic Map2q12.2NCBI
HuRef299,722,503 - 99,730,474 (+)NCBIHuRef
CHM1_12105,958,321 - 105,966,292 (+)NCBICHM1_1
T2T-CHM13v2.02105,798,730 - 105,810,388 (+)NCBI
AI597479
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39143,137,870 - 43,155,106 (+)NCBIGRCm39mm39
GRCm39 Ensembl143,137,870 - 43,155,107 (+)Ensembl
GRCm38143,098,710 - 43,115,946 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl143,098,710 - 43,115,947 (+)EnsemblGRCm38mm10GRCm38
MGSCv37143,155,555 - 43,172,791 (+)NCBIGRCm37mm9NCBIm37
MGSCv36143,043,256 - 43,060,492 (+)NCBImm8
Celera143,437,163 - 43,454,400 (+)NCBICelera
Cytogenetic Map1B- C1.1NCBI
RGD1310553
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2945,371,396 - 45,382,123 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl945,371,430 - 45,382,120 (+)Ensembl
Rnor_6.0949,903,085 - 49,913,754 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl949,903,085 - 49,913,744 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0949,573,659 - 49,584,328 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4942,302,028 - 42,312,697 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1942,303,441 - 42,314,110 (+)NCBI
Celera943,089,365 - 43,100,034 (+)NCBICelera
Cytogenetic Map9q22NCBI
C2AH2orf49
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12A106,422,944 - 106,445,660 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A106,422,944 - 106,445,634 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v02A96,469,934 - 96,492,745 (-)NCBIMhudiblu_PPA_v0panPan3
C10H2orf49
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11038,077,162 - 38,089,899 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1038,080,267 - 38,089,850 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1038,003,434 - 38,015,103 (-)NCBI
ROS_Cfam_1.01038,934,229 - 38,945,916 (-)NCBI
ROS_Cfam_1.0 Ensembl1038,934,231 - 38,945,854 (-)Ensembl
UMICH_Zoey_3.11038,658,842 - 38,670,508 (-)NCBI
UNSW_CanFamBas_1.01038,938,155 - 38,949,836 (-)NCBI
UU_Cfam_GSD_1.01039,130,029 - 39,141,715 (-)NCBI
CUNH2orf49
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629287,232,379 - 87,252,777 (-)NCBI
SpeTri2.0NW_004936764656,431 - 675,591 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
C3H2orf49
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl349,454,560 - 49,465,447 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1349,454,558 - 49,465,442 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
CUNH2orf49
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1148,970,846 - 8,982,525 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl148,971,076 - 8,978,610 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666041176,690,799 - 176,703,947 (+)NCBIVero_WHO_p1.0
CUNH2orf49
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247499,437,273 - 9,445,644 (+)EnsemblHetGla_female_1.0hetGla2
HetGla 1.0NW_0046247499,437,322 - 9,448,119 (+)NCBIHetGla_female_1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000008095   ⟹   ENSCLAP00000007975
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495547010,223,467 - 10,234,309 (+)Ensembl
RefSeq Acc Id: XM_005400782   ⟹   XP_005400839
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495547010,223,467 - 10,234,309 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005400839 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005400839   ⟸   XM_005400782
- Sequence:
RefSeq Acc Id: ENSCLAP00000007975   ⟸   ENSCLAT00000008095


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000005595 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSCLAP00000007975 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000008095 ENTREZGENE, UniProtKB/TrEMBL
NCBI Gene LOC102026964 ENTREZGENE
UniProt A0A8C2V4B6_CHILA UniProtKB/TrEMBL