Cntnap2 (contactin associated protein 2) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Cntnap2 (contactin associated protein 2) Chinchilla lanigera
Analyze
Symbol: Cntnap2
Name: contactin associated protein 2
RGD ID: 8872468
Description: ENCODES a protein that exhibits enzyme binding (ortholog); PDZ domain binding (ortholog); protease binding (ortholog); INVOLVED IN action potential initiation (ortholog); adult behavior (ortholog); associative learning (ortholog); ASSOCIATED WITH articulation disorder (ortholog); autism spectrum disorder (ortholog); autistic disorder (ortholog); FOUND IN axolemma (ortholog); axon (ortholog); axon initial segment (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: contactin associated protein like 2; contactin associated protein-like 2; contactin-associated protein-like 2
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554911,984,050 - 3,981,830 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554911,983,002 - 3,982,510 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
action potential initiation  (ISO)
adult behavior  (ISO)
associative learning  (ISO)
axonogenesis  (ISO)
behavioral response to pain  (ISO)
cell morphogenesis  (ISO)
cell population proliferation  (ISO)
cellular protein localization  (ISO)
central nervous system myelination  (ISO)
cerebellar Purkinje cell layer morphogenesis  (ISO)
cerebellum development  (ISO)
cerebral cortex development  (ISO)
chemical synaptic transmission  (ISO)
circadian sleep/wake cycle  (ISO)
clustering of voltage-gated potassium channels  (ISO)
dendrite arborization  (ISO)
dendritic spine development  (ISO)
dendritic spine maintenance  (ISO)
dendritic spine organization  (ISO)
embryonic brain development  (ISO)
ERK1 and ERK2 cascade  (ISO)
excitatory chemical synaptic transmission  (ISO)
excitatory postsynaptic potential  (ISO)
excitatory synapse assembly  (ISO)
fat cell differentiation  (ISO)
gene expression  (ISO)
glial cell proliferation  (ISO)
glutamatergic neuron differentiation  (ISO)
grooming behavior  (ISO)
in utero embryonic development  (ISO)
inflammatory response  (ISO)
inhibitory chemical synaptic transmission  (ISO)
inhibitory synapse assembly  (ISO)
intracellular signal transduction  (ISO)
learning  (ISO)
limbic system development  (ISO)
locomotor rhythm  (ISO)
locomotory behavior  (ISO)
maintenance of synapse structure  (ISO)
mitochondrion organization  (ISO)
motor behavior  (ISO)
multicellular organism growth  (ISO)
myelination  (ISO)
negative regulation of neuronal action potential  (ISO)
negative regulation of synaptic transmission, GABAergic  (ISO)
neural precursor cell proliferation  (ISO)
neuromuscular junction development, skeletal muscle fiber  (ISO)
neuromuscular process  (ISO)
neuromuscular process controlling posture  (ISO)
neuron projection development  (ISO)
neuron projection morphogenesis  (ISO)
neuronal action potential  (ISO)
positive regulation of gap junction assembly  (ISO)
positive regulation of neuronal action potential  (ISO)
postsynaptic density organization  (ISO)
prepulse inhibition  (ISO)
protein kinase B signaling  (ISO)
protein localization to juxtaparanode region of axon  (ISO)
response to dietary excess  (ISO)
response to heat  (ISO)
response to hormone  (ISO)
response to interleukin-17  (ISO)
response to light intensity  (ISO)
response to mechanical stimulus  (ISO)
response to metformin  (ISO)
response to odorant  (ISO)
response to organic substance  (ISO)
response to pain  (ISO)
response to xenobiotic stimulus  (ISO)
rhythmic behavior  (ISO)
social behavior  (ISO)
startle response  (ISO)
striatum development  (ISO)
superior temporal gyrus development  (ISO)
thalamus development  (ISO)
TOR signaling  (ISO)
transmission of nerve impulse  (ISO)
vocal learning  (ISO)
vocalization behavior  (ISO)
walking behavior  (ISO)

Molecular Function

References


Genomics

Comparative Map Data
Cntnap2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554911,984,050 - 3,981,830 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554911,983,002 - 3,982,510 (+)NCBIChiLan1.0ChiLan1.0
CNTNAP2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl7146,116,002 - 148,420,998 (+)EnsemblGRCh38hg38GRCh38
GRCh387146,116,207 - 148,420,998 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh377145,813,893 - 148,118,090 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 367145,444,386 - 147,749,019 (+)NCBINCBI36hg18NCBI36
Build 347145,251,476 - 147,555,734NCBI
Celera7140,486,396 - 142,788,651 (+)NCBI
Cytogenetic Map7q35-q36.1NCBI
HuRef7139,891,239 - 142,197,449 (+)NCBIHuRef
CHM1_17145,822,316 - 148,126,480 (+)NCBICHM1_1
CRA_TCAGchr7v27145,151,433 - 147,456,408 (+)NCBI
Cntnap2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39645,036,995 - 47,278,330 (+)NCBIGRCm39mm39
GRCm39 Ensembl645,036,291 - 47,281,147 (+)Ensembl
GRCm38645,060,061 - 47,301,393 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl645,059,357 - 47,304,213 (+)EnsemblGRCm38mm10GRCm38
MGSCv37645,010,060 - 47,251,387 (+)NCBIGRCm37mm9NCBIm37
MGSCv36644,989,695 - 47,230,955 (+)NCBImm8
Celera644,970,994 - 47,154,076 (+)NCBICelera
Cytogenetic Map6B2.2- B2.3NCBI
Cntnap2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2474,109,455 - 76,366,434 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl474,109,472 - 76,362,027 (+)Ensembl
Rnor_6.0474,700,539 - 77,025,463 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.04140,006,078 - 140,855,979 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.04141,164,125 - 141,697,964 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4474,277,978 - 75,440,178 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1475,661,775 - 75,716,308 (+)NCBI
Celera468,984,397 - 71,173,021 (+)NCBICelera
Cytogenetic Map4q24NCBI
CNTNAP2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.17150,344,805 - 152,632,198 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl7150,345,240 - 152,626,818 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v07137,858,607 - 140,150,820 (+)NCBIMhudiblu_PPA_v0panPan3
CNTNAP2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1162,239,953 - 4,208,718 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl162,243,918 - 4,208,416 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha163,343,504 - 5,308,739 (-)NCBI
ROS_Cfam_1.0162,046,017 - 4,067,208 (-)NCBI
UMICH_Zoey_3.1162,032,477 - 4,003,070 (-)NCBI
UNSW_CanFamBas_1.0161,891,758 - 3,867,350 (-)NCBI
UU_Cfam_GSD_1.0161,896,111 - 3,930,992 (-)NCBI
Cntnap2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244051188,151,620 - 10,043,987 (-)NCBI
SpeTri2.0NW_0049365272,859,442 - 4,748,885 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CNTNAP2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.19109,740,510 - 111,781,144 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.29120,886,243 - 121,579,520 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CNTNAP2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.121114,741,918 - 116,988,691 (+)NCBIChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366607212,636,077 - 12,937,176 (+)NCBIVero_WHO_p1.0
Cntnap2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248007,182,588 - 9,280,407 (-)NCBIHetGla_female_1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005404887 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AGCD01060367 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01060368 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01060369 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01060370 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01060371 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01060372 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01060373 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01060374 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01060375 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01060376 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01060377 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01060378 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01060379 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01060380 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01060381 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01060382 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01060383 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01060384 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01060385 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01060386 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01060387 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01060388 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01060389 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01060390 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01060391 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01060392 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01060393 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01060394 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01060395 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01060396 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01060397 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01060398 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01060399 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01060400 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01060401 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01060402 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01060403 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01060404 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01060405 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01060406 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01060407 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01060408 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01060409 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01060410 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01060411 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GBDF01230674 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSCLAT00000002104   ⟹   ENSCLAP00000002059
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554911,984,050 - 3,981,830 (+)Ensembl
RefSeq Acc Id: XM_005404887   ⟹   XP_005404944
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554911,983,002 - 3,982,510 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005404944 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005404944   ⟸   XM_005404887
- Sequence:
RefSeq Acc Id: ENSCLAP00000002059   ⟸   ENSCLAT00000002104


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000001496 Ensembl, ENTREZGENE
Ensembl Protein ENSCLAP00000002059 ENTREZGENE
Ensembl Transcript ENSCLAT00000002104 ENTREZGENE
NCBI Gene Cntnap2 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-10-16 Cntnap2  contactin associated protein 2  Cntnap2  contactin associated protein like 2  Symbol and/or name change 5135510 APPROVED
2017-06-20 Cntnap2  contactin associated protein like 2    contactin associated protein-like 2  Symbol and/or name change 5135510 APPROVED