Sun2 (Sad1 and UNC84 domain containing 2) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Sun2 (Sad1 and UNC84 domain containing 2) Chinchilla lanigera
Analyze
Symbol: Sun2
Name: Sad1 and UNC84 domain containing 2
RGD ID: 8869929
Description: ENCODES a protein that exhibits cytoskeleton-nuclear membrane anchor activity (ortholog); identical protein binding (ortholog); lamin binding (ortholog); INVOLVED IN centrosome localization (ortholog); nuclear matrix anchoring at nuclear membrane (ortholog); nuclear migration along microfilament (ortholog); ASSOCIATED WITH adenylosuccinase lyase deficiency (ortholog); Emery-Dreifuss muscular dystrophy (ortholog); genetic disease (ortholog); FOUND IN chromosome, telomeric region (ortholog); condensed nuclear chromosome (ortholog); meiotic nuclear membrane microtubule tethering complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: SUN domain-containing protein 2
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541324,851,626 - 24,865,575 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541324,851,626 - 24,868,352 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Sun2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541324,851,626 - 24,865,575 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541324,851,626 - 24,868,352 (-)NCBIChiLan1.0ChiLan1.0
SUN2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382238,734,734 - 38,755,998 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2238,733,290 - 38,794,143 (-)EnsemblGRCh38hg38GRCh38
GRCh372239,130,739 - 39,152,003 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362237,460,681 - 37,481,893 (-)NCBINCBI36Build 36hg18NCBI36
Celera2222,937,417 - 22,958,629 (-)NCBICelera
Cytogenetic Map22q13.1NCBI
HuRef2222,096,681 - 22,117,814 (-)NCBIHuRef
CHM1_12239,089,643 - 39,110,959 (-)NCBICHM1_1
T2T-CHM13v2.02239,204,948 - 39,226,213 (-)NCBIT2T-CHM13v2.0
Sun2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391579,608,269 - 79,626,757 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1579,608,271 - 79,626,737 (-)EnsemblGRCm39 Ensembl
GRCm381579,724,068 - 79,742,536 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1579,724,070 - 79,742,536 (-)EnsemblGRCm38mm10GRCm38
MGSCv371579,554,500 - 79,572,960 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361579,551,326 - 79,569,785 (-)NCBIMGSCv36mm8
Celera1581,843,119 - 81,861,296 (-)NCBICelera
Cytogenetic Map15E1NCBI
cM Map1537.85NCBI
Sun2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87113,155,766 - 113,172,950 (-)NCBIGRCr8
mRatBN7.27111,275,374 - 111,292,565 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7111,275,380 - 111,292,553 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.07120,950,391 - 120,967,583 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7120,951,560 - 120,967,490 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07120,941,352 - 120,958,534 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47117,962,517 - 117,978,876 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera7107,605,705 - 107,622,897 (-)NCBICelera
Cytogenetic Map7q34NCBI
SUN2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22348,590,621 - 48,615,160 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12251,281,990 - 51,303,357 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02219,649,993 - 19,671,340 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12237,466,953 - 37,487,779 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2237,466,953 - 37,487,779 (-)Ensemblpanpan1.1panPan2
SUN2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11026,055,508 - 26,074,972 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1026,055,536 - 26,074,434 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1026,011,073 - 26,030,530 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01026,846,456 - 26,865,894 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1026,846,444 - 26,865,882 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11026,571,359 - 26,587,580 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01026,879,040 - 26,898,701 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01027,055,803 - 27,075,497 (+)NCBIUU_Cfam_GSD_1.0
Sun2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049459,599,133 - 9,616,133 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364922,609,406 - 2,626,564 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364922,609,444 - 2,629,050 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SUN2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl59,273,240 - 9,293,254 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.159,273,136 - 9,293,258 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.256,516,706 - 6,536,718 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SUN2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11921,401,730 - 21,423,059 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1921,403,341 - 21,419,663 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666045104,336,285 - 104,357,568 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Sun2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247529,396,860 - 9,415,462 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247529,396,860 - 9,414,345 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000024968   ⟹   ENSCLAP00000024730
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495541324,851,626 - 24,865,575 (-)Ensembl
RefSeq Acc Id: XM_005379273   ⟹   XP_005379330
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541324,851,626 - 24,868,352 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005379330 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000024730
  ENSCLAP00000024730.1
Reference Protein Sequences
RefSeq Acc Id: XP_005379330   ⟸   XM_005379273
- UniProtKB: A0A8C2WBY3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000024730   ⟸   ENSCLAT00000024968
Protein Domains
SUN


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000016978 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000024968 ENTREZGENE
  ENSCLAT00000024968.1 UniProtKB/TrEMBL
Gene3D-CATH Galactose-binding domain-like UniProtKB/TrEMBL
InterPro SUN1-5 UniProtKB/TrEMBL
  Sun_CC2 UniProtKB/TrEMBL
  SUN_dom UniProtKB/TrEMBL
NCBI Gene Sun2 ENTREZGENE
PANTHER PTHR12911 UniProtKB/TrEMBL
  PTHR12911:SF22 UniProtKB/TrEMBL
Pfam HTH_SUN2 UniProtKB/TrEMBL
  Sad1_UNC UniProtKB/TrEMBL
PROSITE SUN UniProtKB/TrEMBL
UniProt A0A8C2WBY3 ENTREZGENE, UniProtKB/TrEMBL