Ralgapb (Ral GTPase activating protein non-catalytic subunit beta) - Rat Genome Database

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Gene: Ralgapb (Ral GTPase activating protein non-catalytic subunit beta) Chinchilla lanigera
Analyze
Symbol: Ralgapb
Name: Ral GTPase activating protein non-catalytic subunit beta (Ensembl:Ral GTPase activating protein non-catalytic beta subunit)
RGD ID: 8868781
Description: ENCODES a protein that exhibits GTPase activator activity (ortholog); protein heterodimerization activity (ortholog); INVOLVED IN Ral protein signal transduction (ortholog); regulation of exocyst localization (ortholog); regulation of protein localization (ortholog); ASSOCIATED WITH Developmental Disease (ortholog); focal epilepsy (ortholog); genetic disease (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Ral GTPase activating protein non-catalytic beta subunit; Ral GTPase activating protein, beta subunit (non-catalytic); ral GTPase-activating protein subunit beta
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544518,140,944 - 18,241,128 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495544518,146,316 - 18,241,128 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Ralgapb
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544518,140,944 - 18,241,128 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495544518,146,316 - 18,241,128 (-)NCBIChiLan1.0ChiLan1.0
RALGAPB
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382038,472,843 - 38,578,858 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2038,472,816 - 38,578,859 (+)EnsemblGRCh38hg38GRCh38
GRCh372037,101,486 - 37,207,501 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362036,534,900 - 36,640,918 (+)NCBINCBI36Build 36hg18NCBI36
Celera2033,812,295 - 33,918,296 (+)NCBICelera
Cytogenetic Map20q11.23NCBI
HuRef2033,838,335 - 33,944,354 (+)NCBIHuRef
CHM1_12037,005,720 - 37,111,714 (+)NCBICHM1_1
T2T-CHM13v2.02040,202,515 - 40,308,510 (+)NCBIT2T-CHM13v2.0
Ralgapb
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392158,251,722 - 158,341,173 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2158,251,768 - 158,341,173 (+)EnsemblGRCm39 Ensembl
GRCm382158,409,830 - 158,499,253 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2158,409,848 - 158,499,253 (+)EnsemblGRCm38mm10GRCm38
MGSCv372158,235,589 - 158,324,989 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362158,101,294 - 158,190,694 (+)NCBIMGSCv36mm8
Celera2164,346,414 - 164,436,672 (+)NCBICelera
Cytogenetic Map2H1NCBI
cM Map278.72NCBI
Ralgapb
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83167,482,344 - 167,571,975 (+)NCBIGRCr8
mRatBN7.23147,062,443 - 147,152,090 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3147,062,364 - 147,152,090 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3150,911,879 - 150,984,063 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03159,411,177 - 159,483,366 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03157,146,426 - 157,218,737 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03154,910,291 - 154,983,021 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3154,905,141 - 154,983,021 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03160,623,751 - 160,696,177 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43149,137,224 - 149,212,377 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13149,031,561 - 149,118,099 (+)NCBI
Celera3145,780,077 - 145,852,667 (+)NCBICelera
Cytogenetic Map3q42NCBI
RALGAPB
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22144,197,244 - 44,304,118 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12044,190,342 - 44,297,208 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02034,797,472 - 34,903,367 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12035,906,029 - 36,011,685 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2035,906,029 - 36,011,685 (+)Ensemblpanpan1.1panPan2
RALGAPB
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12426,948,626 - 27,032,092 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2426,961,628 - 27,070,850 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2426,594,210 - 26,677,570 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02427,645,025 - 27,728,261 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2427,644,901 - 27,728,254 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12426,919,244 - 27,002,002 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02427,027,094 - 27,110,307 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02427,515,215 - 27,598,354 (+)NCBIUU_Cfam_GSD_1.0
Ralgapb
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640175,840,609 - 175,945,320 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365612,804,052 - 2,908,880 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365612,806,195 - 2,908,909 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RALGAPB
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1741,507,806 - 41,606,898 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11741,507,756 - 41,606,903 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21746,951,706 - 47,014,116 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RALGAPB
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1225,177,380 - 25,285,938 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl225,176,956 - 25,307,991 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605074,014,842 - 74,123,559 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ralgapb
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248421,067,648 - 1,167,833 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248421,067,651 - 1,167,779 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000013126   ⟹   ENSCLAP00000012976
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495544518,140,944 - 18,223,731 (-)Ensembl
RefSeq Acc Id: ENSCLAT00000013127   ⟹   ENSCLAP00000012977
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495544518,146,316 - 18,241,128 (-)Ensembl
RefSeq Acc Id: ENSCLAT00000013128   ⟹   ENSCLAP00000012978
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495544518,146,316 - 18,241,127 (-)Ensembl
RefSeq Acc Id: ENSCLAT00000013129   ⟹   ENSCLAP00000012979
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495544518,146,418 - 18,223,701 (-)Ensembl
RefSeq Acc Id: XM_005392533   ⟹   XP_005392590
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495544518,146,316 - 18,241,127 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005392534   ⟹   XP_005392591
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495544518,146,316 - 18,241,128 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013518287   ⟹   XP_013373741
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495544518,146,316 - 18,241,127 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013518288   ⟹   XP_013373742
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495544518,146,316 - 18,227,940 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_005392591   ⟸   XM_005392534
- Peptide Label: isoform X2
- UniProtKB: A0A8C2VCS1 (UniProtKB/TrEMBL),   A0A8C2VHJ7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005392590   ⟸   XM_005392533
- Peptide Label: isoform X1
- UniProtKB: A0A8C2VET7 (UniProtKB/TrEMBL),   A0A8C2VHJ7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013373741   ⟸   XM_013518287
- Peptide Label: isoform X1
- UniProtKB: A0A8C2VET7 (UniProtKB/TrEMBL),   A0A8C2VHJ7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013373742   ⟸   XM_013518288
- Peptide Label: isoform X1
- UniProtKB: A0A8C2VET7 (UniProtKB/TrEMBL),   A0A8C2VHJ7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000012976   ⟸   ENSCLAT00000013126
RefSeq Acc Id: ENSCLAP00000012977   ⟸   ENSCLAT00000013127
RefSeq Acc Id: ENSCLAP00000012978   ⟸   ENSCLAT00000013128
RefSeq Acc Id: ENSCLAP00000012979   ⟸   ENSCLAT00000013129
Protein Domains
Rap-GAP


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000008957 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000013126.1 UniProtKB/TrEMBL
  ENSCLAT00000013127 ENTREZGENE
  ENSCLAT00000013127.1 UniProtKB/TrEMBL
  ENSCLAT00000013128 ENTREZGENE
  ENSCLAT00000013128.1 UniProtKB/TrEMBL
  ENSCLAT00000013129 ENTREZGENE
  ENSCLAT00000013129.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.11210 UniProtKB/TrEMBL
InterPro RALGAPB UniProtKB/TrEMBL
  Rap/Ran-GAP_sf UniProtKB/TrEMBL
  Rap/Ran_GAP_dom UniProtKB/TrEMBL
  RGPA/RALGAPB_N UniProtKB/TrEMBL
NCBI Gene Ralgapb ENTREZGENE
PANTHER PTHR21344 UniProtKB/TrEMBL
  RAL GTPASE-ACTIVATING PROTEIN SUBUNIT BETA UniProtKB/TrEMBL
Pfam RALGAPB_N UniProtKB/TrEMBL
PROSITE RAPGAP UniProtKB/TrEMBL
Superfamily-SCOP SSF111347 UniProtKB/TrEMBL
UniProt A0A8C2VCS1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C2VET7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C2VHJ7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C2VI02_CHILA UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-09-07 Ralgapb  Ral GTPase activating protein non-catalytic subunit beta  Ralgapb  Ral GTPase activating protein non-catalytic beta subunit  Symbol and/or name change 5135510 APPROVED
2016-08-03 Ralgapb  Ral GTPase activating protein non-catalytic beta subunit    Ral GTPase activating protein, beta subunit (non-catalytic)  Symbol and/or name change 5135510 APPROVED