Cenpn (centromere protein N) - Rat Genome Database

Name: Cenpn
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: Cenpn (centromere protein N) Chinchilla lanigera

Analyze

Symbol:

Cenpn

Name:

centromere protein N

RGD ID:

8868452

Description:

ASSOCIATED WITH giant axonal neuropathy 1 (ortholog); FOUND IN nucleoplasm (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

RGD Orthologs

Human

Mouse

Rat

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	CENPN (centromere protein N)	NCBI	Ortholog
Mus musculus (house mouse):	Cenpn (centromere protein N)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Cenpn (centromere protein N)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	CENPN (centromere protein N)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	CENPN (centromere protein N)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Cenpn (centromere protein N)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	CENPN (centromere protein N)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (African green monkey):	CENPN (centromere protein N)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Cenpn (centromere protein N)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

ChiLan1.0 - Chinchilla ChiLan1.0 Assembly

Position:

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955522	3,804,578 - 3,818,885 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955522	3,801,856 - 3,818,675 (+)	NCBI	ChiLan1.0	ChiLan1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

giant axonal neuropathy 1 (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Cellular Component

nucleoplasm (ISO)

Molecular Function

protein binding (ISO)

References

References - curated


1.	Automated assignment of GO, PW and RDO ISS annotations to Chinchilla, Squirrel, Bonobo and/or Dog genes from Human gene annotations

Genomics

Comparative Map Data

Cenpn
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955522	3,804,578 - 3,818,885 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955522	3,801,856 - 3,818,675 (+)	NCBI	ChiLan1.0	ChiLan1.0

CENPN
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38.p13 Ensembl	16	81,006,498 - 81,033,114 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh38	16	81,007,214 - 81,033,107 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh37	16	81,040,103 - 81,066,712 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
GRCh37	16	81,040,819 - 81,066,712 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	16	79,597,604 - 79,624,213 (+)	NCBI	NCBI36		hg18	NCBI36
Celera	16	65,338,504 - 65,365,102 (+)	NCBI
Cytogenetic Map	16	q23.2	NCBI
HuRef	16	66,796,979 - 66,823,593 (+)	NCBI		HuRef
CHM1_1	16	82,451,471 - 82,478,069 (+)	NCBI		CHM1_1

Cenpn
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	8	117,648,448 - 117,668,243 (+)	NCBI	GRCm39		mm39
GRCm38	8	116,921,716 - 116,941,504 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	8	116,921,730 - 116,941,507 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	8	119,445,640 - 119,465,403 (+)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	8	119,807,717 - 119,827,480 (+)	NCBI			mm8
Celera	8	121,141,125 - 121,160,889 (+)	NCBI		Celera
Cytogenetic Map	8	E1	NCBI

Cenpn
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	19	44,971,265 - 44,994,019 (+)	NCBI
Rnor_6.0 Ensembl	19	49,340,184 - 49,479,996 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0	19	49,457,461 - 49,479,989 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	19	60,248,687 - 60,271,301 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	19	47,029,240 - 47,051,557 (+)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	19	47,034,120 - 47,056,438 (+)	NCBI
Celera	19	44,244,906 - 44,267,223 (+)	NCBI		Celera
Cytogenetic Map	19	q12	NCBI

CENPN
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	16	81,039,744 - 81,067,931 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	16	81,039,744 - 81,067,919 (+)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	16	61,611,724 - 61,639,253 (+)	NCBI	Mhudiblu_PPA_v0		panPan3

CENPN
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1 Ensembl	5	70,798,886 - 70,820,960 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
CanFam3.1	5	70,798,322 - 70,820,927 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1

Cenpn
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
SpeTri2.0	NW_004936475	28,683,233 - 28,702,466 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CENPN
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	7,227,982 - 7,254,866 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	6	7,227,981 - 7,254,927 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

CENPN
(Chlorocebus sabaeus - African green monkey)

Vervet Assembly	Chr	Position (strand)	Source	Genome Browsers
Vervet Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	5	66,459,008 - 66,483,945 (+)	NCBI
ChlSab1.1 Ensembl	5	66,464,569 - 66,483,932 (+)	Ensembl

Cenpn
(Heterocephalus glaber - naked mole-rat)

Molerat Assembly	Chr	Position (strand)	Source	Genome Browsers
Molerat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624746	6,309,194 - 6,331,152 (-)	NCBI

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005409347	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005409348	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AGCD01068398	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GBDF01120914	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSCLAT00000000376 ⟹ ENSCLAP00000000348

RefSeq Status:

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955522	3,804,578 - 3,818,885 (+)	Ensembl

RefSeq Acc Id:

XM_005409347 ⟹ XP_005409404

RefSeq Status:

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955522	3,801,856 - 3,818,675 (+)	NCBI

Sequence:

show sequence

AGCGTGTAGGCGGCAGGACATGCCATTGGTGGCTTTGAAGGCGCGTCGGCGGGAACAGGGCTGA
GGAGACGGCTGTGGATATGGGCCGCACCAGAGAGATGGATGAGATTCTGGCCGAGTTTATCAGG
AGGACCATCTTAAAAATCCCCATGGCTAAAATGATGACAATCTTAAAAACCTGGGGGTTTTTGT
CTGAAACCCAGTTGCAGACCCTAAACTTCAAGCAGAGAAAAGAATCTTTGGTTCAGGACTTGCT
TCTGCTGTGTGAGGAGAACTGTGCAAGTATCAACGATGTGGCCCTTTTAGACATCGTTTATACA
CAAGTTCATCGGCACCAGAAAATGTGGGATGTTTTTCATATGAGTAAAGAAACAGATGAAGATG
TTGACATTTTTGATGTGGAAGAATTCAAAAGCTCATTTAAGAAAATTCTTCACAGAGCCTTAAA
AAACGTGACAGTGAGCTTCAGGGACACCGAGGAGAATGCAGTCTGGATCCGAATCGCCTGGGGG
ACTCAGCACAAAAAGCCCAACCAGTACAAACCTACGTACGTGGTGTATCACTCCCAGACGCCGT
TCGCCTTCACCTCTTCCTCCAGGCTGAAGGGCACCGTACCCCTTCTGGGTCAGGCACTGACAGT
CGCCAGCAAACACCATAAGATCGTGCAAATGGACCTGAGGAGCCGGCACCTGGACTCTCTCAAG
GCAATCGTTTTCAAACAGTTCAACCAGATCTTTGAAAATCACAACTCTACAACACCTCTTCAGG
AAAGAACTCTTGGGCTAGATATAAACATGGACTCCAGGATCATTCATGAAAACACCGTAGAAAA
AGAGAGGGTCCGAAGAGTAACTGAAGAGACATTCGGGGTCTGCCCTCAGCCTCAACTAGAATTT
GCTCAGTACAAGCTTGAAACGAAGTTCAAAGGTGACTTATGTGGGGGCGTCTTGGCCGAGAGAG
AAGAGCCCCTCCGGTGCCTGATAAAGTTCTCCAGCCCGCATCTTTTGGAAGCACTGAAATCCTT
AGCTCCAGCGGGTATTGCAGATGCTCCACTTTCTCCATTGCTCACTTGCATACCCAACAAGGCG
ATGAATTATTTTAAAATTAGAGATAAATAAGATGTGTGTGGTTTTATAAGCCAGTGGCTCCTTG
ATTATCTGGCACATGCATTCCAGTTAGTGGTGAGCTGGAGAGCGTCTGTCTGTAAACTTGCTTT
TTAGAAACGATCCTTGGTATTTAATTCAGAAACAGCCGTGTAATTATTGGGACTGTTTCCTCCT
CCCTGTTCCACACCCCCACCCTTTCCTGATAAGTAGAGCAGTTGTGGGCATCTGAGGTGCCACA
GGTATCTGTATGGCTCCGGGTTGCTCTCACGTCATGCGAATGGCACAGCGGCGGAGCCTGTGGG
TGTGATGTCTGGTGGCGTTTTGCCTACTCCCACATCTGTGTGATCTTGGGAGGTCTGGTTCCAG
TTGCTGGTTTCTGAGGATTTTCTGTTAAGCCTTGGATCACGGAAAGAAGCACCAAGAAGCTATA
CCCAACTCAGCACTCCTAGGTATTGGTCCATTCAGAGGGTGGGGGTGCGTCTGCTGAGTTGCTA
TTGCAGGAGGTTGCATATCTGATGATTCACTTACATAAAACAGTTGTGTCACTGTAAATATACT
TTTCATAGTCTAATTTTTTTCATAGTCTAATTTTTTCATAGTCTAATTTATCACGTGACATTCA
CACTGACATACTAATTTGTGAATAATAAAGATACAATATTGAAAAACTA

hide sequence

RefSeq Acc Id:

XM_005409348 ⟹ XP_005409405

RefSeq Status:

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955522	3,801,930 - 3,818,675 (+)	NCBI

Sequence:

show sequence

GTGGATATGGGCCGGTAAGACAGCCTCTAACGGCCTGAGATCGGTCTGCAAGGTGGTGAGAGCC
TTGAAGAAGTCAGAGACCAGCACCAGAGAGATGGATGAGATTCTGGCCGAGTTTATCAGGAGGA
CCATCTTAAAAATCCCCATGGCTAAAATGATGACAATCTTAAAAACCTGGGGGTTTTTGTCTGA
AACCCAGTTGCAGACCCTAAACTTCAAGCAGAGAAAAGAATCTTTGGTTCAGGACTTGCTTCTG
CTGTGTGAGGAGAACTGTGCAAGTATCAACGATGTGGCCCTTTTAGACATCGTTTATACACAAG
TTCATCGGCACCAGAAAATGTGGGATGTTTTTCATATGAGTAAAGAAACAGATGAAGATGTTGA
CATTTTTGATGTGGAAGAATTCAAAAGCTCATTTAAGAAAATTCTTCACAGAGCCTTAAAAAAC
GTGACAGTGAGCTTCAGGGACACCGAGGAGAATGCAGTCTGGATCCGAATCGCCTGGGGGACTC
AGCACAAAAAGCCCAACCAGTACAAACCTACGTACGTGGTGTATCACTCCCAGACGCCGTTCGC
CTTCACCTCTTCCTCCAGGCTGAAGGGCACCGTACCCCTTCTGGGTCAGGCACTGACAGTCGCC
AGCAAACACCATAAGATCGTGCAAATGGACCTGAGGAGCCGGCACCTGGACTCTCTCAAGGCAA
TCGTTTTCAAACAGTTCAACCAGATCTTTGAAAATCACAACTCTACAACACCTCTTCAGGAAAG
AACTCTTGGGCTAGATATAAACATGGACTCCAGGATCATTCATGAAAACACCGTAGAAAAAGAG
AGGGTCCGAAGAGTAACTGAAGAGACATTCGGGGTCTGCCCTCAGCCTCAACTAGAATTTGCTC
AGTACAAGCTTGAAACGAAGTTCAAAGGTGACTTATGTGGGGGCGTCTTGGCCGAGAGAGAAGA
GCCCCTCCGGTGCCTGATAAAGTTCTCCAGCCCGCATCTTTTGGAAGCACTGAAATCCTTAGCT
CCAGCGGGTATTGCAGATGCTCCACTTTCTCCATTGCTCACTTGCATACCCAACAAGGCGATGA
ATTATTTTAAAATTAGAGATAAATAAGATGTGTGTGGTTTTATAAGCCAGTGGCTCCTTGATTA
TCTGGCACATGCATTCCAGTTAGTGGTGAGCTGGAGAGCGTCTGTCTGTAAACTTGCTTTTTAG
AAACGATCCTTGGTATTTAATTCAGAAACAGCCGTGTAATTATTGGGACTGTTTCCTCCTCCCT
GTTCCACACCCCCACCCTTTCCTGATAAGTAGAGCAGTTGTGGGCATCTGAGGTGCCACAGGTA
TCTGTATGGCTCCGGGTTGCTCTCACGTCATGCGAATGGCACAGCGGCGGAGCCTGTGGGTGTG
ATGTCTGGTGGCGTTTTGCCTACTCCCACATCTGTGTGATCTTGGGAGGTCTGGTTCCAGTTGC
TGGTTTCTGAGGATTTTCTGTTAAGCCTTGGATCACGGAAAGAAGCACCAAGAAGCTATACCCA
ACTCAGCACTCCTAGGTATTGGTCCATTCAGAGGGTGGGGGTGCGTCTGCTGAGTTGCTATTGC
AGGAGGTTGCATATCTGATGATTCACTTACATAAAACAGTTGTGTCACTGTAAATATACTTTTC
ATAGTCTAATTTTTTTCATAGTCTAATTTTTTCATAGTCTAATTTATCACGTGACATTCACACT
GACATACTAATTTGTGAATAATAAAGATACAATATTGAAAAACTA

hide sequence

Protein Sequences


Protein RefSeqs	XP_005409404	(Get FASTA)	NCBI Sequence Viewer
	XP_005409405	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

XP_005409404 ⟸ XM_005409347

- Peptide Label:

isoform X1

- Sequence:

show sequence

MGRTREMDEILAEFIRRTILKIPMAKMMTILKTWGFLSETQLQTLNFKQRKESLVQDLLLLCEE
NCASINDVALLDIVYTQVHRHQKMWDVFHMSKETDEDVDIFDVEEFKSSFKKILHRALKNVTVS
FRDTEENAVWIRIAWGTQHKKPNQYKPTYVVYHSQTPFAFTSSSRLKGTVPLLGQALTVASKHH
KIVQMDLRSRHLDSLKAIVFKQFNQIFENHNSTTPLQERTLGLDINMDSRIIHENTVEKERVRR
VTEETFGVCPQPQLEFAQYKLETKFKGDLCGGVLAEREEPLRCLIKFSSPHLLEALKSLAPAGI
ADAPLSPLLTCIPNKAMNYFKIRDK

hide sequence

RefSeq Acc Id:

XP_005409405 ⟸ XM_005409348

- Peptide Label:

isoform X2

- Sequence:

show sequence

MDEILAEFIRRTILKIPMAKMMTILKTWGFLSETQLQTLNFKQRKESLVQDLLLLCEENCASIN
DVALLDIVYTQVHRHQKMWDVFHMSKETDEDVDIFDVEEFKSSFKKILHRALKNVTVSFRDTEE
NAVWIRIAWGTQHKKPNQYKPTYVVYHSQTPFAFTSSSRLKGTVPLLGQALTVASKHHKIVQMD
LRSRHLDSLKAIVFKQFNQIFENHNSTTPLQERTLGLDINMDSRIIHENTVEKERVRRVTEETF
GVCPQPQLEFAQYKLETKFKGDLCGGVLAEREEPLRCLIKFSSPHLLEALKSLAPAGIADAPLS
PLLTCIPNKAMNYFKIRDK

hide sequence

RefSeq Acc Id:

ENSCLAP00000000348 ⟸ ENSCLAT00000000376

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCLAG00000000300	Ensembl, ENTREZGENE
Ensembl Protein	ENSCLAP00000000348	ENTREZGENE
Ensembl Transcript	ENSCLAT00000000376	ENTREZGENE
NCBI Gene	Cenpn	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar