LOC102018145 (cytochrome P450 4V2) - Rat Genome Database

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Gene: LOC102018145 (cytochrome P450 4V2) Chinchilla lanigera
Analyze
Symbol: LOC102018145 (Ensembl: CYP4V2)
Name: cytochrome P450 4V2
RGD ID: 8865912
Description: INVOLVED IN fatty acid omega-oxidation (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); autistic disorder (ortholog); Bietti crystalline corneoretinal dystrophy (ortholog); FOUND IN endoplasmic reticulum membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540322,870,299 - 22,912,221 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540322,870,299 - 22,912,221 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
LOC102018145
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540322,870,299 - 22,912,221 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540322,870,299 - 22,912,221 (-)NCBIChiLan1.0ChiLan1.0
CYP4V2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh384186,191,567 - 186,213,463 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl4186,191,567 - 186,213,463 (+)EnsemblGRCh38hg38GRCh38
GRCh374187,112,721 - 187,134,617 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 364187,349,668 - 187,371,606 (+)NCBINCBI36Build 36hg18NCBI36
Celera4184,435,120 - 184,457,152 (+)NCBICelera
Cytogenetic Map4q35.1-q35.2NCBI
HuRef4182,865,016 - 182,886,685 (+)NCBIHuRef
CHM1_14187,089,103 - 187,111,056 (+)NCBICHM1_1
T2T-CHM13v2.04189,531,931 - 189,553,879 (+)NCBIT2T-CHM13v2.0
Cyp4v3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39845,758,838 - 45,786,200 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl845,757,981 - 45,786,253 (-)EnsemblGRCm39 Ensembl
GRCm38845,305,801 - 45,333,163 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl845,304,944 - 45,333,216 (-)EnsemblGRCm38mm10GRCm38
MGSCv37846,391,156 - 46,418,550 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36846,804,619 - 46,832,013 (-)NCBIMGSCv36mm8
Celera847,992,790 - 48,020,649 (-)NCBICelera
Cytogenetic Map8B1.1NCBI
cM Map825.17NCBI
Cyp4v3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81653,650,978 - 53,675,916 (+)NCBIGRCr8
mRatBN7.21646,917,929 - 46,958,735 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1646,918,401 - 46,943,395 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1652,311,401 - 52,336,349 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01655,688,719 - 55,713,657 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01650,950,790 - 50,975,739 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01650,111,803 - 50,136,741 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1650,111,306 - 50,136,727 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01649,834,760 - 49,859,698 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41650,208,687 - 50,233,625 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11650,230,694 - 50,234,530 (+)NCBI
Celera1644,908,995 - 44,933,933 (+)NCBICelera
Cytogenetic Map16q11NCBI
CYP4V2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v23183,932,985 - 183,955,540 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan14184,282,569 - 184,304,590 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v04178,361,611 - 178,384,381 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.14190,568,496 - 190,588,409 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl4190,568,743 - 190,588,025 (+)Ensemblpanpan1.1panPan2
CYP4V2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11644,523,583 - 44,541,781 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1645,011,284 - 45,031,527 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01646,738,051 - 46,758,685 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1646,738,064 - 46,758,788 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11644,706,622 - 44,726,822 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01645,319,495 - 45,339,725 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01645,450,728 - 45,470,965 (-)NCBIUU_Cfam_GSD_1.0
LOC101967774
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494334,816,709 - 34,837,194 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365543,272,073 - 3,293,564 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365543,272,139 - 3,293,288 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CYP4V2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1547,046,269 - 47,068,304 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11547,038,078 - 47,068,315 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21553,904,343 - 53,909,542 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CYP4V2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.17132,108,650 - 132,129,338 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl7132,108,551 - 132,130,962 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037112,428,993 - 112,451,338 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
LOC101716986
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476917,025,500 - 17,048,965 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476917,026,203 - 17,046,366 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000024285   ⟹   ENSCLAP00000024054
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495540322,870,299 - 22,912,221 (-)Ensembl
RefSeq Acc Id: XM_005373433   ⟹   XP_005373490
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540322,870,299 - 22,912,221 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005373490 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000024054
  ENSCLAP00000024054.1
Reference Protein Sequences
RefSeq Acc Id: XP_005373490   ⟸   XM_005373433
- UniProtKB: A0A8C2W2P5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000024054   ⟸   ENSCLAT00000024285


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000016518 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000024285 ENTREZGENE
  ENSCLAT00000024285.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.630.10 UniProtKB/TrEMBL
InterPro Cyt_P450 UniProtKB/TrEMBL
  Cyt_P450_CS UniProtKB/TrEMBL
  Cyt_P450_E_grp-I UniProtKB/TrEMBL
  Cyt_P450_sf UniProtKB/TrEMBL
NCBI Gene LOC102018145 ENTREZGENE
PANTHER CYTOCHROME P450 4V2 UniProtKB/TrEMBL
  CYTOCHROME P450 FAMILY 4 UniProtKB/TrEMBL
Pfam p450 UniProtKB/TrEMBL
PRINTS EP450I UniProtKB/TrEMBL
  P450 UniProtKB/TrEMBL
PROSITE CYTOCHROME_P450 UniProtKB/TrEMBL
Superfamily-SCOP SSF48264 UniProtKB/TrEMBL
UniProt A0A8C2W2P5 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-08-25 LOC102018145  cytochrome P450 4V2    cytochrome P450 4V2-like  Symbol and/or name change 5135510 APPROVED