Osr1 (odd-skipped related transcription factor 1) - Rat Genome Database

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Gene: Osr1 (odd-skipped related transcription factor 1) Chinchilla lanigera
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Symbol: Osr1
Name: odd-skipped related transcription factor 1
RGD ID: 8865621
Description: ENCODES a protein that exhibits sequence-specific double-stranded DNA binding (ortholog); INVOLVED IN cell differentiation (ortholog); cell proliferation involved in kidney development (ortholog); cellular response to retinoic acid (ortholog); FOUND IN cytosol (ortholog); extrinsic component of membrane (ortholog); nucleus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: odd-skipped related 1; odd-skipped related transciption factor 1
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554691,953,370 - 1,961,390 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554691,954,470 - 1,961,344 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
cell differentiation  (ISO)
cell proliferation involved in kidney development  (ISO)
cellular response to retinoic acid  (ISO)
chondrocyte differentiation  (ISO)
embryonic digit morphogenesis  (ISO)
embryonic forelimb morphogenesis  (ISO)
embryonic hindlimb morphogenesis  (ISO)
embryonic skeletal joint development  (ISO)
embryonic skeletal joint morphogenesis  (ISO)
embryonic skeletal limb joint morphogenesis  (ISO)
gonad development  (ISO)
heart development  (ISO)
intermediate mesoderm development  (ISO)
mesangial cell development  (ISO)
mesonephric duct morphogenesis  (ISO)
mesonephros development  (ISO)
metanephric cap mesenchymal cell proliferation involved in metanephros development  (ISO)
metanephric epithelium development  (ISO)
metanephric glomerulus vasculature development  (ISO)
metanephric interstitial fibroblast development  (ISO)
metanephric mesenchymal cell differentiation  (ISO)
metanephric mesenchyme development  (ISO)
metanephric mesenchyme morphogenesis  (ISO)
metanephric nephron tubule development  (ISO)
metanephric smooth muscle tissue development  (ISO)
metanephros development  (ISO)
middle ear morphogenesis  (ISO)
negative regulation of apoptotic process  (ISO)
negative regulation of creatine transmembrane transporter activity  (ISO)
negative regulation of epithelial cell differentiation  (ISO)
negative regulation of nephron tubule epithelial cell differentiation  (ISO)
negative regulation of sodium ion transmembrane transporter activity  (ISO)
negative regulation of transcription by RNA polymerase II  (ISO)
odontogenesis  (ISO)
pattern specification involved in metanephros development  (ISO)
positive regulation of bone mineralization  (ISO)
positive regulation of epithelial cell proliferation  (ISO)
positive regulation of gastrulation  (ISO)
positive regulation of gene expression  (ISO)
positive regulation of transcription by RNA polymerase II  (ISO)
posterior mesonephric tubule development  (ISO)
pronephros development  (ISO)
renal vesicle progenitor cell differentiation  (ISO)
roof of mouth development  (ISO)
specification of anterior mesonephric tubule identity  (ISO)
specification of posterior mesonephric tubule identity  (ISO)
stem cell differentiation  (ISO)
ureter urothelium development  (ISO)
ureteric bud development  (ISO)
urogenital system development  (ISO)

Cellular Component

Molecular Function

References


Genomics

Comparative Map Data
Osr1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554691,953,370 - 1,961,390 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554691,954,470 - 1,961,344 (-)NCBIChiLan1.0ChiLan1.0
OSR1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl219,351,485 - 19,358,623 (-)EnsemblGRCh38hg38GRCh38
GRCh38219,351,485 - 19,358,623 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37219,551,246 - 19,558,384 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36219,414,727 - 19,421,853 (-)NCBINCBI36hg18NCBI36
Celera219,413,711 - 19,420,835 (-)NCBI
Cytogenetic Map2p24.1NCBI
HuRef219,308,802 - 19,315,925 (-)NCBIHuRef
CHM1_1219,480,638 - 19,487,763 (-)NCBICHM1_1
Osr1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39129,624,442 - 9,631,500 (+)NCBIGRCm39mm39
GRCm39 Ensembl129,620,116 - 9,631,500 (+)Ensembl
GRCm38129,574,442 - 9,581,500 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl129,570,116 - 9,581,500 (+)EnsemblGRCm38mm10GRCm38
MGSCv37129,581,248 - 9,588,306 (+)NCBIGRCm37mm9NCBIm37
MGSCv36129,600,505 - 9,606,919 (+)NCBImm8
Celera129,956,176 - 9,963,227 (+)NCBICelera
Cytogenetic Map12A1.1NCBI
cM Map124.05NCBI
Osr1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2632,369,561 - 32,380,822 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl632,373,816 - 32,380,817 (+)Ensembl
Rnor_6.0635,314,431 - 35,321,458 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl635,314,444 - 35,321,667 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0645,074,989 - 45,086,319 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4633,074,410 - 33,076,769 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1633,062,739 - 33,079,153 (+)NCBI
Celera631,814,629 - 31,816,988 (+)NCBICelera
Cytogenetic Map6q14NCBI
OSR1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12A19,451,067 - 19,458,229 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A19,451,067 - 19,458,229 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v02A19,333,101 - 19,340,267 (-)NCBIMhudiblu_PPA_v0panPan3
OSR1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11714,508,543 - 14,515,657 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1714,509,333 - 14,589,228 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1714,460,884 - 14,467,497 (-)NCBI
ROS_Cfam_1.01714,653,874 - 14,660,498 (-)NCBI
UMICH_Zoey_3.11714,507,592 - 14,514,210 (-)NCBI
UNSW_CanFamBas_1.01714,515,766 - 14,522,381 (-)NCBI
UU_Cfam_GSD_1.01714,546,710 - 14,553,327 (-)NCBI
Osr1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629258,944,539 - 58,951,592 (-)NCBI
SpeTri2.0NW_00493649311,888,024 - 11,895,058 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
OSR1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl3118,521,296 - 118,932,446 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.13118,368,471 - 118,765,107 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.23126,839,630 - 126,845,239 (+)NCBISscrofa10.2Sscrofa10.2susScr3
OSR1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11488,364,115 - 88,371,258 (+)NCBI
ChlSab1.1 Ensembl1488,364,166 - 88,371,263 (+)Ensembl
Vero_WHO_p1.0NW_02366604523,861,885 - 23,869,038 (-)NCBI
Osr1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247382,136,228 - 2,559,092 (-)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000013799   ⟹   ENSCLAP00000013644
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554691,953,370 - 1,961,390 (-)Ensembl
RefSeq Acc Id: XM_005400337   ⟹   XP_005400394
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554691,954,470 - 1,961,344 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005400394 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005400394   ⟸   XM_005400337
- Sequence:
RefSeq Acc Id: ENSCLAP00000013644   ⟸   ENSCLAT00000013799


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000009423 Ensembl, ENTREZGENE
Ensembl Protein ENSCLAP00000013644 ENTREZGENE
Ensembl Transcript ENSCLAT00000013799 ENTREZGENE
NCBI Gene Osr1 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2018-11-13 Osr1  odd-skipped related transcription factor 1    odd-skipped related transciption factor 1  Symbol and/or name change 5135510 APPROVED
2015-08-25 Osr1  odd-skipped related transciption factor 1    odd-skipped related 1 (Drosophila)  Symbol and/or name change 5135510 APPROVED