Gba2 (glucosylceramidase beta 2) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Gba2 (glucosylceramidase beta 2) Chinchilla lanigera
Analyze
Symbol: Gba2
Name: glucosylceramidase beta 2
RGD ID: 8865576
Description: ENCODES a protein that exhibits beta-glucosidase activity (ortholog); glucosylceramidase activity (ortholog); glucosyltransferase activity (ortholog); INVOLVED IN bile acid metabolic process (ortholog); central nervous system neuron development (ortholog); cholesterol metabolic process (ortholog); ASSOCIATED WITH anauxetic dysplasia (ortholog); dilated cardiomyopathy (ortholog); distal arthrogryposis type 1A (ortholog); FOUND IN cytosol (ortholog); extrinsic component of endoplasmic reticulum membrane (ortholog); extrinsic component of Golgi membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: glucosidase, beta (bile acid) 2; non-lysosomal glucosylceramidase
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955472553,556 - 564,411 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955472553,556 - 564,411 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References


Genomics

Comparative Map Data
Gba2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955472553,556 - 564,411 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955472553,556 - 564,411 (+)NCBIChiLan1.0ChiLan1.0
GBA2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl935,736,866 - 35,749,228 (-)EnsemblGRCh38hg38GRCh38
GRCh38935,736,862 - 35,749,228 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37935,736,863 - 35,749,225 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36935,726,863 - 35,739,225 (-)NCBINCBI36hg18NCBI36
Build 34935,726,863 - 35,739,225NCBI
Celera935,670,413 - 35,682,776 (-)NCBI
Cytogenetic Map9p13.3NCBI
HuRef935,692,483 - 35,704,845 (-)NCBIHuRef
CHM1_1935,737,266 - 35,749,629 (-)NCBICHM1_1
Gba2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39443,566,928 - 43,578,886 (-)NCBIGRCm39mm39
GRCm39 Ensembl443,566,928 - 43,578,873 (-)Ensembl
GRCm38443,566,928 - 43,578,886 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl443,566,928 - 43,578,873 (-)EnsemblGRCm38mm10GRCm38
MGSCv37443,579,800 - 43,591,736 (-)NCBIGRCm37mm9NCBIm37
MGSCv36443,588,037 - 43,599,649 (-)NCBImm8
Celera443,600,917 - 43,612,853 (-)NCBICelera
Cytogenetic Map4A5NCBI
Gba2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2557,822,389 - 57,834,522 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl557,822,389 - 57,834,072 (-)Ensembl
Rnor_6.0559,068,081 - 59,079,719 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl559,068,081 - 59,079,719 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0563,592,675 - 63,604,313 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4560,045,397 - 60,057,035 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1560,045,575 - 60,057,254 (-)NCBI
Celera556,402,961 - 56,414,599 (-)NCBICelera
Cytogenetic Map5q22NCBI
GBA2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1936,390,407 - 36,402,949 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl936,390,409 - 36,402,949 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0935,587,876 - 35,599,971 (-)NCBIMhudiblu_PPA_v0panPan3
GBA2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11152,264,959 - 52,277,298 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1152,265,070 - 52,277,213 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1150,832,513 - 50,844,997 (-)NCBI
ROS_Cfam_1.01153,329,882 - 53,342,367 (-)NCBI
UMICH_Zoey_3.11151,874,428 - 51,886,910 (-)NCBI
UNSW_CanFamBas_1.01151,857,946 - 51,870,446 (-)NCBI
UU_Cfam_GSD_1.01152,560,096 - 52,572,581 (-)NCBI
Gba2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947167,183,253 - 167,194,759 (-)NCBI
SpeTri2.0NW_0049365243,730,833 - 3,742,526 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GBA2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1236,455,240 - 236,468,210 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11236,456,238 - 236,467,887 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21264,181,426 - 264,193,076 (-)NCBISscrofa10.2Sscrofa10.2susScr3
GBA2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11244,852,048 - 44,865,542 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl1244,852,203 - 44,868,652 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366603841,956,699 - 41,969,099 (+)NCBIVero_WHO_p1.0
Gba2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248685,045,566 - 5,056,419 (+)NCBIHetGla_female_1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000008829   ⟹   ENSCLAP00000008701
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_004955472553,556 - 564,411 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000008830   ⟹   ENSCLAP00000008702
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_004955472554,775 - 560,295 (+)Ensembl
RefSeq Acc Id: XM_005401007   ⟹   XP_005401064
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955472553,556 - 564,411 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005401064 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005401064   ⟸   XM_005401007
- Sequence:
RefSeq Acc Id: ENSCLAP00000008702   ⟸   ENSCLAT00000008830
RefSeq Acc Id: ENSCLAP00000008701   ⟸   ENSCLAT00000008829


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000006092 Ensembl, ENTREZGENE
Ensembl Protein ENSCLAP00000008701 ENTREZGENE
Ensembl Transcript ENSCLAT00000008829 ENTREZGENE
NCBI Gene Gba2 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-03 Gba2  glucosylceramidase beta 2    glucosidase, beta (bile acid) 2  Symbol and/or name change 5135510 APPROVED