Cacng2 (calcium voltage-gated channel auxiliary subunit gamma 2) - Rat Genome Database

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Gene: Cacng2 (calcium voltage-gated channel auxiliary subunit gamma 2) Chinchilla lanigera
Analyze
Symbol: Cacng2
Name: calcium voltage-gated channel auxiliary subunit gamma 2
RGD ID: 8865214
Description: ENCODES a protein that exhibits ionotropic glutamate receptor binding (ortholog); voltage-gated calcium channel activity (ortholog); INVOLVED IN eye blink reflex (ortholog); membrane depolarization (ortholog); membrane hyperpolarization (ortholog); PARTICIPATES IN calcium/calmodulin dependent kinase 2 signaling pathway; ASSOCIATED WITH adenylosuccinase lyase deficiency (ortholog); autosomal dominant intellectual developmental disorder 10 (ortholog); childhood absence epilepsy (ortholog); FOUND IN AMPA glutamate receptor complex (ortholog); cell surface (ortholog); cerebellar mossy fiber (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: calcium channel, voltage-dependent, gamma subunit 2; voltage-dependent calcium channel gamma-2 subunit
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541323,132,896 - 23,248,231 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541323,136,369 - 23,248,231 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Cacng2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541323,132,896 - 23,248,231 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541323,136,369 - 23,248,231 (-)NCBIChiLan1.0ChiLan1.0
CACNG2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382236,560,857 - 36,703,752 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2236,560,857 - 36,703,752 (-)EnsemblGRCh38hg38GRCh38
GRCh372236,956,904 - 37,099,797 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362235,290,050 - 35,428,849 (-)NCBINCBI36Build 36hg18NCBI36
Build 342235,284,603 - 35,423,403NCBI
Celera2220,762,236 - 20,901,711 (-)NCBICelera
Cytogenetic Map22q12.3NCBI
HuRef2219,924,851 - 20,065,866 (-)NCBIHuRef
CHM1_12236,915,848 - 37,057,863 (-)NCBICHM1_1
T2T-CHM13v2.02237,021,025 - 37,164,438 (-)NCBIT2T-CHM13v2.0
Cacng2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391577,876,119 - 78,004,420 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1577,875,948 - 78,004,228 (-)EnsemblGRCm39 Ensembl
GRCm381577,991,919 - 78,120,220 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1577,991,748 - 78,120,028 (-)EnsemblGRCm38mm10GRCm38
MGSCv371577,824,053 - 77,949,710 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361577,822,211 - 77,946,535 (-)NCBIMGSCv36mm8
Celera1579,452,871 - 79,580,282 (-)NCBICelera
Cytogenetic Map15E1NCBI
cM Map1536.92NCBI
Cacng2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87111,451,605 - 111,579,071 (-)NCBIGRCr8
mRatBN7.27109,572,838 - 109,698,516 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7109,574,459 - 109,697,227 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7111,324,291 - 111,447,205 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07113,547,853 - 113,670,771 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07113,515,808 - 113,638,800 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.07119,228,112 - 119,353,332 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7119,228,102 - 119,352,605 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07119,221,311 - 119,344,620 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47115,913,440 - 116,037,891 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.17115,947,669 - 116,072,121 (-)NCBI
Celera7105,915,114 - 106,037,137 (-)NCBICelera
Cytogenetic Map7q34NCBI
CACNG2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22346,415,282 - 46,557,237 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12249,106,496 - 49,247,988 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02217,475,693 - 17,618,299 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12235,313,679 - 35,454,844 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2235,317,121 - 35,454,850 (-)Ensemblpanpan1.1panPan2
CACNG2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11027,750,314 - 27,862,646 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1027,750,935 - 27,862,885 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1027,704,742 - 27,816,319 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01028,542,976 - 28,647,844 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1028,543,246 - 28,649,561 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11028,264,819 - 28,376,310 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01028,572,787 - 28,684,331 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01028,751,224 - 28,862,860 (+)NCBIUU_Cfam_GSD_1.0
Cacng2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494511,115,362 - 11,221,857 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364924,125,173 - 4,236,062 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364924,125,182 - 4,232,239 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CACNG2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl511,067,692 - 11,185,480 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1511,067,016 - 11,185,480 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.258,846,099 - 8,866,357 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CACNG2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11919,263,950 - 19,406,952 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1919,267,426 - 19,406,883 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666045106,459,860 - 106,604,857 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cacng2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475211,062,002 - 11,170,406 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475211,062,059 - 11,172,357 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSCLAT00000024576   ⟹   ENSCLAP00000024341
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495541323,132,896 - 23,248,231 (-)Ensembl
RefSeq Acc Id: XM_005379165   ⟹   XP_005379222
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541323,136,369 - 23,248,231 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005379222 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000024341
  ENSCLAP00000024341.1
RefSeq Acc Id: XP_005379222   ⟸   XM_005379165
- UniProtKB: A0A8C2W2U7 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSCLAP00000024341   ⟸   ENSCLAT00000024576


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000016716 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000024576 ENTREZGENE
  ENSCLAT00000024576.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.140.150 UniProtKB/TrEMBL
InterPro CACNG_subunit UniProtKB/TrEMBL
  PMP22/EMP/MP20/Claudin UniProtKB/TrEMBL
  VDCC_g2su UniProtKB/TrEMBL
  VDCC_gsu UniProtKB/TrEMBL
NCBI Gene Cacng2 ENTREZGENE
PANTHER PTHR12107:SF1 UniProtKB/TrEMBL
  VOLTAGE-DEPENDENT CALCIUM CHANNEL GAMMA SUBUNIT UniProtKB/TrEMBL
Pfam PMP22_Claudin UniProtKB/TrEMBL
PRINTS VDCCGAMMA UniProtKB/TrEMBL
  VDCCGAMMA2 UniProtKB/TrEMBL
UniProt A0A8C2W2U7 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-03 Cacng2  calcium voltage-gated channel auxiliary subunit gamma 2    calcium channel, voltage-dependent, gamma subunit 2  Symbol and/or name change 5135510 APPROVED