Gprc5d (G protein-coupled receptor class C group 5 member D) - Rat Genome Database

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Gene: Gprc5d (G protein-coupled receptor class C group 5 member D) Chinchilla lanigera
Analyze
Symbol: Gprc5d
Name: G protein-coupled receptor class C group 5 member D
RGD ID: 8864262
Description: ASSOCIATED WITH autosomal dominant intellectual developmental disorder 6 (ortholog); genetic disease (ortholog); FOUND IN plasma membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: G protein-coupled receptor, class C, group 5, member D; G protein-coupled receptor, family C, group 5, member D; G-protein coupled receptor family C group 5 member D
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554139,805,839 - 9,815,616 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554139,805,848 - 9,815,616 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Gprc5d
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554139,805,839 - 9,815,616 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554139,805,848 - 9,815,616 (-)NCBIChiLan1.0ChiLan1.0
GPRC5D
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381212,940,575 - 12,952,170 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1212,940,575 - 12,952,170 (-)EnsemblGRCh38hg38GRCh38
GRCh371213,093,509 - 13,105,104 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361212,984,976 - 12,994,585 (-)NCBINCBI36Build 36hg18NCBI36
Build 341212,984,975 - 12,994,585NCBI
Celera1218,242,561 - 18,252,157 (-)NCBICelera
Cytogenetic Map12p13.1NCBI
HuRef1212,863,299 - 12,872,851 (-)NCBIHuRef
CHM1_11213,059,039 - 13,068,587 (-)NCBICHM1_1
T2T-CHM13v2.01212,814,207 - 12,827,419 (-)NCBIT2T-CHM13v2.0
Gprc5d
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396135,082,989 - 135,095,281 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl6135,082,989 - 135,095,281 (-)EnsemblGRCm39 Ensembl
GRCm386135,105,991 - 135,118,283 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6135,105,991 - 135,118,283 (-)EnsemblGRCm38mm10GRCm38
MGSCv376135,056,009 - 135,068,301 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv366135,071,684 - 135,083,976 (-)NCBIMGSCv36mm8
Celera6138,061,630 - 138,073,612 (-)NCBICelera
Cytogenetic Map6G1NCBI
cM Map665.89NCBI
Gprc5d
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84169,674,874 - 169,686,965 (-)NCBIGRCr8
mRatBN7.24167,943,523 - 167,955,616 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4167,943,523 - 167,955,616 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4174,238,761 - 174,250,851 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04170,019,983 - 170,032,080 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04168,644,122 - 168,656,210 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04168,872,897 - 168,884,925 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4168,872,897 - 168,884,886 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04233,143,883 - 233,155,649 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44172,027,523 - 172,039,757 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera4156,539,852 - 156,551,914 (-)NCBICelera
Cytogenetic Map4q43NCBI
GPRC5D
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21018,395,811 - 18,408,659 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11218,392,571 - 18,405,437 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01212,960,297 - 12,961,437 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11213,332,090 - 13,341,531 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1213,332,090 - 13,341,470 (-)Ensemblpanpan1.1panPan2
GPRC5D
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12733,415,856 - 33,424,772 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2733,286,571 - 33,426,458 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2713,019,891 - 13,028,135 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02733,722,472 - 33,730,740 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.12733,616,739 - 33,625,006 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02733,567,110 - 33,575,385 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02712,754,918 - 12,763,281 (-)NCBIUU_Cfam_GSD_1.0
Gprc5d
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494594,667,809 - 94,677,787 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365874,395,405 - 4,405,424 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365874,396,912 - 4,405,416 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GPRC5D
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl559,527,895 - 59,545,857 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1559,534,913 - 59,545,417 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2562,862,675 - 62,864,597 (+)NCBISscrofa10.2Sscrofa10.2susScr3
GPRC5D
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11112,846,623 - 12,869,310 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1112,846,036 - 12,857,124 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606922,459,979 - 22,472,879 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Gprc5d
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475225,030,667 - 25,039,397 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475225,029,315 - 25,039,231 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000021315   ⟹   ENSCLAP00000021114
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554139,805,839 - 9,815,616 (-)Ensembl
RefSeq Acc Id: ENSCLAT00000021316   ⟹   ENSCLAP00000021115
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554139,805,839 - 9,815,616 (-)Ensembl
RefSeq Acc Id: XM_005378976   ⟹   XP_005379033
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554139,805,848 - 9,815,616 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005378977   ⟹   XP_005379034
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554139,806,032 - 9,815,616 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005379033 (Get FASTA)   NCBI Sequence Viewer  
  XP_005379034 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000021114
  ENSCLAP00000021114.1
  ENSCLAP00000021115
  ENSCLAP00000021115.1
Reference Protein Sequences
RefSeq Acc Id: XP_005379033   ⟸   XM_005378976
- Peptide Label: isoform X1
- UniProtKB: A0A8C2YT05 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005379034   ⟸   XM_005378977
- Peptide Label: isoform X2
- UniProtKB: A0A8C2VVA9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000021115   ⟸   ENSCLAT00000021316
RefSeq Acc Id: ENSCLAP00000021114   ⟸   ENSCLAT00000021315
Protein Domains
G-protein coupled receptors family 3 profile


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000014469 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000021315 ENTREZGENE
  ENSCLAT00000021315.1 UniProtKB/TrEMBL
  ENSCLAT00000021316 ENTREZGENE
  ENSCLAT00000021316.1 UniProtKB/TrEMBL
InterPro GPCR_3_C UniProtKB/TrEMBL
NCBI Gene Gprc5d ENTREZGENE
PANTHER G PROTEIN COUPLED RECEPTOR, CLASS C, GROUP 5 UniProtKB/TrEMBL
  G-PROTEIN COUPLED RECEPTOR FAMILY C GROUP 5 MEMBER D UniProtKB/TrEMBL
Pfam 7tm_3 UniProtKB/TrEMBL
UniProt A0A8C2VVA9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C2YT05 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-03 Gprc5d  G protein-coupled receptor class C group 5 member D    G protein-coupled receptor, class C, group 5, member D  Symbol and/or name change 5135510 APPROVED
2015-08-25 Gprc5d  G protein-coupled receptor, class C, group 5, member D    G protein-coupled receptor, family C, group 5, member D  Symbol and/or name change 5135510 APPROVED