Iqcn (IQ motif containing N) - Rat Genome Database

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Gene: Iqcn (IQ motif containing N) Chinchilla lanigera
Analyze
Symbol: Iqcn
Name: IQ motif containing N
RGD ID: 8861761
Description: INVOLVED IN spermatid development (ortholog); ASSOCIATED WITH genetic disease (ortholog); Megalencephaly-Polymicrogyria-Polydactyly-Hydrocephalus Syndrome 1 (ortholog); Spermatogenic Failure 78 (ortholog); FOUND IN mitochondrion (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Kiaa1683; KIAA1683 ortholog; uncharacterized protein KIAA1683 homolog
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049555243,181,133 - 3,195,111 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
Iqcn
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049555243,181,133 - 3,195,111 (+)NCBIChiLan1.0ChiLan1.0
IQCN
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381918,257,098 - 18,274,452 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1918,257,098 - 18,274,500 (-)EnsemblGRCh38hg38GRCh38
GRCh371918,367,908 - 18,385,262 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361918,228,908 - 18,246,235 (-)NCBINCBI36Build 36hg18NCBI36
Build 341918,228,907 - 18,246,235NCBI
Celera1918,269,630 - 18,287,045 (-)NCBICelera
Cytogenetic Map19p13.11NCBI
HuRef1917,931,567 - 17,948,982 (-)NCBIHuRef
CHM1_11918,368,170 - 18,385,585 (-)NCBICHM1_1
T2T-CHM13v2.01918,391,196 - 18,408,552 (-)NCBIT2T-CHM13v2.0
Iqcn
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39871,154,661 - 71,170,299 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl871,156,106 - 71,170,299 (+)EnsemblGRCm39 Ensembl
GRCm38870,701,321 - 70,717,650 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl870,703,457 - 70,717,650 (+)EnsemblGRCm38mm10GRCm38
MGSCv37873,232,059 - 73,241,549 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36873,637,149 - 73,651,080 (+)NCBIMGSCv36mm8
Celera873,264,658 - 73,274,148 (+)NCBICelera
Cytogenetic Map8B3.3NCBI
cM Map834.15NCBI
Iqcn
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81618,750,492 - 18,766,184 (-)NCBIGRCr8
mRatBN7.21618,716,519 - 18,733,971 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1618,716,519 - 18,726,261 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1618,758,451 - 18,773,053 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01619,891,390 - 19,906,139 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01618,811,400 - 18,826,003 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01620,467,425 - 20,483,375 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01620,324,493 - 20,339,412 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41619,222,176 - 19,223,162 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1618,908,707 - 18,924,642 (-)NCBICelera
Cytogenetic Map16p14NCBI
IQCN
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22023,114,554 - 23,132,163 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11922,122,872 - 22,140,388 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01917,732,673 - 17,750,226 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11918,708,154 - 18,719,269 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1918,708,155 - 18,719,021 (-)Ensemblpanpan1.1panPan2
IQCN
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12044,743,889 - 44,758,625 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2044,745,584 - 44,758,637 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2044,658,051 - 44,672,793 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02045,229,714 - 45,244,539 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.12044,466,869 - 44,481,627 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02044,877,601 - 44,892,330 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02045,152,767 - 45,167,506 (+)NCBIUU_Cfam_GSD_1.0
Iqcn
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118203,393,995 - 203,406,713 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365962,944,534 - 2,955,765 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
IQCN
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1259,545,325 - 59,558,077 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
IQCN
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1616,732,296 - 16,745,050 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660742,632,811 - 2,643,498 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Iqcn
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046249081,558,560 - 1,583,275 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_013507314   ⟹   XP_013362768
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555243,181,133 - 3,195,111 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013507315   ⟹   XP_013362769
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555243,181,133 - 3,195,111 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013507316   ⟹   XP_013362770
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555243,181,133 - 3,195,111 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013507317   ⟹   XP_013362771
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555243,181,133 - 3,195,111 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013507318   ⟹   XP_013362772
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555243,181,133 - 3,195,111 (+)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_013362768   ⟸   XM_013507314
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_013362771   ⟸   XM_013507317
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_013362769   ⟸   XM_013507315
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_013362772   ⟸   XM_013507318
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_013362770   ⟸   XM_013507316
- Peptide Label: isoform X3
- Sequence:


Additional Information

Database Acc Id Source(s)
NCBI Gene LOC102020602 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-10-31 Iqcn  IQ motif containing N  Kiaa1683  KIAA1683 ortholog  Symbol and/or name change 5135510 APPROVED
2015-08-25 Kiaa1683  KIAA1683 ortholog  LOC102020602  uncharacterized LOC102020602  Symbol and/or name change 5135510 APPROVED