Znf396 (zinc finger protein 396) - Rat Genome Database

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Gene: Znf396 (zinc finger protein 396) Chinchilla lanigera
Analyze
Symbol: Znf396
Name: zinc finger protein 396
RGD ID: 8859934
Description: ENCODES a protein that exhibits protein heterodimerization activity (ortholog); protein homodimerization activity (ortholog); sequence-specific double-stranded DNA binding (ortholog); INVOLVED IN negative regulation of DNA-templated transcription (ortholog); ASSOCIATED WITH genetic disease (ortholog); intellectual disability (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540222,086,660 - 22,093,375 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540222,087,109 - 22,095,664 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (ISO)
nucleus  (ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Znf396
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540222,086,660 - 22,093,375 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540222,087,109 - 22,095,664 (-)NCBIChiLan1.0ChiLan1.0
ZNF396
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381835,366,694 - 35,377,337 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1835,366,694 - 35,377,337 (-)EnsemblGRCh38hg38GRCh38
GRCh371832,946,658 - 32,957,301 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361831,200,659 - 31,211,299 (-)NCBINCBI36Build 36hg18NCBI36
Build 341831,200,658 - 31,211,299NCBI
Celera1829,754,500 - 29,765,152 (-)NCBICelera
Cytogenetic Map18q12.2NCBI
HuRef1829,806,663 - 29,817,315 (-)NCBIHuRef
CHM1_11832,873,613 - 32,884,376 (-)NCBICHM1_1
T2T-CHM13v2.01835,558,034 - 35,568,691 (-)NCBIT2T-CHM13v2.0
ZNF396
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21752,756,564 - 52,765,969 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11838,449,155 - 38,458,560 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01828,586,022 - 28,595,600 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11832,173,881 - 32,184,196 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1832,173,881 - 32,184,196 (-)Ensemblpanpan1.1panPan2
ZNF396
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1754,665,057 - 54,748,122 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl754,664,522 - 54,673,505 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha754,167,274 - 54,179,833 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0 Ensembl754,706,748 - 54,719,259 (+)EnsemblROS_Cfam_1.0 Ensembl
Znf396
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494450,391,624 - 50,399,968 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365179,718,934 - 9,727,687 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365179,719,061 - 9,726,131 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZNF396
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6119,187,106 - 119,193,296 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.16119,184,995 - 119,193,334 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.26111,646,260 - 111,651,939 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ZNF396
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11845,398,167 - 45,405,683 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605019,902,728 - 19,907,819 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Znf396
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247799,750,890 - 9,757,184 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247799,748,970 - 9,757,170 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000013220   ⟹   ENSCLAP00000013069
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495540222,086,660 - 22,093,375 (-)Ensembl
RefSeq Acc Id: XM_013509662   ⟹   XP_013365116
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540222,087,109 - 22,095,664 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013365116 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000013069
  ENSCLAP00000013069.1
Reference Protein Sequences
RefSeq Acc Id: XP_013365116   ⟸   XM_013509662
- Sequence:
RefSeq Acc Id: ENSCLAP00000013069   ⟸   ENSCLAT00000013220
Protein Domains
C2H2-type   SCAN box


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000009022 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000013220 ENTREZGENE
  ENSCLAT00000013220.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.4020.10 UniProtKB/TrEMBL
  Classic Zinc Finger UniProtKB/TrEMBL
InterPro SCAN_dom UniProtKB/TrEMBL
  SCAN_sf UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/TrEMBL
NCBI Gene Znf396 ENTREZGENE
PANTHER PROTEIN ZBED8-RELATED UniProtKB/TrEMBL
  SCAN DOMAIN-CONTAINING PROTEIN 3 UniProtKB/TrEMBL
Pfam SCAN UniProtKB/TrEMBL
  zf-C2H2 UniProtKB/TrEMBL
PROSITE SCAN_BOX UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
SMART SCAN UniProtKB/TrEMBL
  ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP Retrovirus capsid dimerization domain-like UniProtKB/TrEMBL
  SSF57667 UniProtKB/TrEMBL
UniProt A0A8C2YP64_CHILA UniProtKB/TrEMBL