Ift20 (intraflagellar transport 20) - Rat Genome Database

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Gene: Ift20 (intraflagellar transport 20) Chinchilla lanigera
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Symbol: Ift20
Name: intraflagellar transport 20
RGD ID: 8858507
Description: ENCODES a protein that exhibits opsin binding (ortholog); small GTPase binding (ortholog); INVOLVED IN cardiac muscle cell differentiation (ortholog); centrosome localization (ortholog); cilium assembly (ortholog); FOUND IN acrosomal vesicle (ortholog); centriole (ortholog); centrosome (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: intraflagellar transport 20 homolog; intraflagellar transport protein 20 homolog
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554814,799,548 - 4,807,751 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554814,799,548 - 4,807,751 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References


Genomics

Comparative Map Data
Ift20
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554814,799,548 - 4,807,751 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554814,799,548 - 4,807,751 (+)NCBIChiLan1.0ChiLan1.0
IFT20
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381728,328,326 - 28,335,472 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl1728,328,325 - 28,335,489 (-)EnsemblGRCh38hg38GRCh38
GRCh371726,655,352 - 26,662,498 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361723,679,480 - 23,686,622 (-)NCBINCBI36hg18NCBI36
Celera1723,517,095 - 23,524,237 (-)NCBI
Cytogenetic Map17q11.2NCBI
HuRef1722,863,745 - 22,870,909 (-)NCBIHuRef
CHM1_11726,718,244 - 26,725,407 (-)NCBICHM1_1
T2T-CHM13v2.01729,270,174 - 29,277,320 (-)NCBI
Ift20
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391178,427,187 - 78,432,558 (+)NCBIGRCm39mm39
GRCm39 Ensembl1178,427,187 - 78,432,563 (+)Ensembl
GRCm381178,536,361 - 78,541,732 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1178,536,361 - 78,541,737 (+)EnsemblGRCm38mm10GRCm38
MGSCv371178,349,938 - 78,354,975 (+)NCBIGRCm37mm9NCBIm37
MGSCv361178,352,631 - 78,357,668 (+)NCBImm8
Celera1188,168,509 - 88,173,546 (+)NCBICelera
Cytogenetic Map11B5NCBI
Ift20
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21063,432,597 - 63,438,125 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl1063,432,633 - 63,438,124 (+)Ensembl
Rnor_6.01065,805,808 - 65,811,353 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1065,805,860 - 65,811,351 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01065,832,267 - 65,837,794 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41064,647,046 - 64,652,537 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11064,660,751 - 64,665,876 (+)NCBI
Celera1062,409,186 - 62,414,668 (+)NCBICelera
Cytogenetic Map10q25NCBI
IFT20
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11728,941,303 - 28,948,129 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1728,941,303 - 28,948,129 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01728,438,960 - 28,446,113 (+)NCBIMhudiblu_PPA_v0panPan3
IFT20
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1942,581,117 - 42,587,830 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl942,581,433 - 42,587,804 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha941,738,040 - 41,744,762 (-)NCBI
ROS_Cfam_1.0943,400,250 - 43,406,984 (-)NCBI
ROS_Cfam_1.0 Ensembl943,400,253 - 43,406,956 (-)Ensembl
UMICH_Zoey_3.1942,184,523 - 42,191,233 (-)NCBI
UNSW_CanFamBas_1.0942,475,746 - 42,482,460 (-)NCBI
UU_Cfam_GSD_1.0942,552,794 - 42,559,508 (-)NCBI
Ift20
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560241,603,943 - 41,613,893 (-)NCBI
SpeTri2.0NW_0049365384,484,484 - 4,491,688 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
IFT20
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1244,609,586 - 44,616,669 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11244,609,586 - 44,616,685 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21246,522,079 - 46,529,162 (-)NCBISscrofa10.2Sscrofa10.2susScr3
IFT20
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11622,094,383 - 22,102,234 (-)NCBIChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660758,026,450 - 8,034,181 (+)NCBIVero_WHO_p1.0
Ift20
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624786928,123 - 939,515 (-)NCBIHetGla_female_1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000017253   ⟹   ENSCLAP00000017085
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554814,799,548 - 4,807,751 (+)Ensembl
RefSeq Acc Id: XM_005402762   ⟹   XP_005402819
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554814,799,548 - 4,807,751 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005402763   ⟹   XP_005402820
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554814,799,548 - 4,807,751 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005402764   ⟹   XP_005402821
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554814,799,548 - 4,807,751 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005402766   ⟹   XP_005402823
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554814,799,550 - 4,807,751 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005402767   ⟹   XP_005402824
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554814,799,761 - 4,807,751 (+)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: XP_005402819   ⟸   XM_005402762
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_005402820   ⟸   XM_005402763
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_005402821   ⟸   XM_005402764
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_005402823   ⟸   XM_005402766
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_005402824   ⟸   XM_005402767
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSCLAP00000017085   ⟸   ENSCLAT00000017253


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000011729 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSCLAP00000017085 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000017253 ENTREZGENE, UniProtKB/TrEMBL
NCBI Gene Ift20 ENTREZGENE
UniProt A0A8C2VPU5_CHILA UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-08-25 Ift20  intraflagellar transport 20    intraflagellar transport 20 homolog (Chlamydomonas)  Symbol and/or name change 5135510 APPROVED