Tigar (TP53 induced glycolysis regulatory phosphatase) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Tigar (TP53 induced glycolysis regulatory phosphatase) Chinchilla lanigera
Analyze
Symbol: Tigar
Name: TP53 induced glycolysis regulatory phosphatase
RGD ID: 8858319
Description: ENCODES a protein that exhibits fructose-2,6-bisphosphate 2-phosphatase activity (ortholog); INVOLVED IN cardiac muscle cell apoptotic process (ortholog); cellular response to cobalt ion (ortholog); cellular response to hypoxia (ortholog); ASSOCIATED WITH episodic ataxia type 1 (ortholog); Hyperphosphatemic Familial Tumoral Calcinosis 1 (ortholog); lymphoproliferative syndrome 2 (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); mitochondrial outer membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: fructose-2,6-bisphosphatase TIGAR
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554132,129,678 - 2,154,380 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554132,129,719 - 2,153,873 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Tigar
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554132,129,678 - 2,154,380 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554132,129,719 - 2,153,873 (+)NCBIChiLan1.0ChiLan1.0
TIGAR
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38124,321,213 - 4,360,028 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl124,307,763 - 4,360,028 (+)EnsemblGRCh38hg38GRCh38
GRCh37124,430,379 - 4,469,194 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36124,300,620 - 4,339,455 (+)NCBINCBI36Build 36hg18NCBI36
Build 34124,300,631 - 4,332,599NCBI
Celera126,052,425 - 6,091,264 (+)NCBICelera
Cytogenetic Map12p13.32NCBI
HuRef124,287,018 - 4,325,825 (+)NCBIHuRef
CHM1_1124,429,992 - 4,468,805 (+)NCBICHM1_1
T2T-CHM13v2.0124,327,996 - 4,366,805 (+)NCBIT2T-CHM13v2.0
Tigar
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396127,062,079 - 127,086,564 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl6127,062,079 - 127,086,520 (-)EnsemblGRCm39 Ensembl
GRCm386127,085,116 - 127,109,552 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6127,085,116 - 127,109,557 (-)EnsemblGRCm38mm10GRCm38
MGSCv376127,035,134 - 127,059,570 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv366127,052,982 - 127,075,160 (-)NCBIMGSCv36mm8
MGSCv366127,984,031 - 128,005,972 (-)NCBIMGSCv36mm8
Celera6128,766,834 - 128,786,116 (-)NCBICelera
Cytogenetic Map6F3NCBI
cM Map661.92NCBI
Tigar
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84161,613,306 - 161,632,248 (-)NCBIGRCr8
mRatBN7.24159,927,136 - 159,946,077 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4159,927,139 - 159,946,029 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4166,156,946 - 166,175,860 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04161,939,848 - 161,958,766 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04160,573,896 - 160,592,815 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04159,635,145 - 159,654,108 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4159,635,153 - 159,654,063 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04231,948,786 - 231,966,869 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44163,481,393 - 163,502,412 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera4148,642,195 - 148,661,115 (-)NCBICelera
Cytogenetic Map4q42NCBI
TIGAR
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2109,860,833 - 9,893,058 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1129,857,630 - 9,896,658 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0124,429,945 - 4,462,142 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1124,353,272 - 4,386,758 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl124,353,272 - 4,385,380 (+)Ensemblpanpan1.1panPan2
TIGAR
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12740,521,751 - 40,549,304 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2740,523,314 - 40,549,332 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha276,132,902 - 6,160,282 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02740,877,557 - 40,905,336 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2740,877,558 - 40,905,335 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12740,815,806 - 40,843,030 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02740,791,244 - 40,818,291 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0275,543,778 - 5,570,944 (+)NCBIUU_Cfam_GSD_1.0
Tigar
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945104,632,126 - 104,665,630 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366064,518,584 - 4,540,114 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366064,518,525 - 4,540,109 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TIGAR
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl566,044,686 - 66,067,377 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1566,044,679 - 66,067,571 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2568,266,609 - 68,289,947 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TIGAR
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1114,354,911 - 4,381,762 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl114,355,053 - 4,381,273 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660633,861,799 - 3,888,740 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tigar
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248601,417,131 - 1,457,717 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248601,416,419 - 1,455,953 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSCLAT00000019307   ⟹   ENSCLAP00000019122
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554132,129,678 - 2,154,380 (+)Ensembl
RefSeq Acc Id: XM_005378727   ⟹   XP_005378784
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554132,129,994 - 2,153,873 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005378728   ⟹   XP_005378785
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554132,129,719 - 2,153,873 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005378784 (Get FASTA)   NCBI Sequence Viewer  
  XP_005378785 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000019122
  ENSCLAP00000019122.1
RefSeq Acc Id: XP_005378785   ⟸   XM_005378728
- Peptide Label: isoform X2
- UniProtKB: A0A8C2YS21 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005378784   ⟸   XM_005378727
- Peptide Label: isoform X1
- Sequence:
Ensembl Acc Id: ENSCLAP00000019122   ⟸   ENSCLAT00000019307


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000013103 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000019307 ENTREZGENE
  ENSCLAT00000019307.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.1240 UniProtKB/TrEMBL
InterPro His_Pase_superF_clade-1 UniProtKB/TrEMBL
  His_PPase_superfam UniProtKB/TrEMBL
  PG/BPGM_mutase_AS UniProtKB/TrEMBL
  Phosphoglycerate_Mutase UniProtKB/TrEMBL
NCBI Gene LOC102029277 ENTREZGENE
PANTHER FRUCTOSE-2,6-BISPHOSPHATASE TIGAR UniProtKB/TrEMBL
  FRUCTOSE-2,6-BISPHOSPHATASE TIGAR UniProtKB/TrEMBL
Pfam His_Phos_1 UniProtKB/TrEMBL
PIRSF 6PFK_2-Ptase UniProtKB/TrEMBL
PROSITE PG_MUTASE UniProtKB/TrEMBL
SMART PGAM UniProtKB/TrEMBL
Superfamily-SCOP SSF53254 UniProtKB/TrEMBL
UniProt A0A8C2YS21 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-08-25 Tigar  TP53 induced glycolysis regulatory phosphatase  LOC102029277  chromosome unknown open reading frame, human C12orf5  Symbol and/or name change 5135510 APPROVED