Wipi2 (WD repeat domain, phosphoinositide interacting 2) - Rat Genome Database

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Gene: Wipi2 (WD repeat domain, phosphoinositide interacting 2) Chinchilla lanigera
Analyze
Symbol: Wipi2
Name: WD repeat domain, phosphoinositide interacting 2
RGD ID: 8858267
Description: ENCODES a protein that exhibits phosphatidylinositol-3,5-bisphosphate binding (ortholog); phosphatidylinositol-3-phosphate binding (ortholog); phosphatidylinositol-5-phosphate binding (ortholog); INVOLVED IN autophagosome assembly (ortholog); autophagosome maturation (ortholog); cellular response to starvation (ortholog); ASSOCIATED WITH INTELLECTUAL DEVELOPMENTAL DISORDER WITH SHORT STATURE AND VARIABLE SKELETAL ANOMALIES (ortholog); FOUND IN autophagosome (ortholog); cytosol (ortholog); membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: WD repeat domain phosphoinositide-interacting protein 2
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495546010,090,349 - 10,130,384 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495546010,090,343 - 10,132,724 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References


Genomics

Comparative Map Data
Wipi2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495546010,090,349 - 10,130,384 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495546010,090,343 - 10,132,724 (+)NCBIChiLan1.0ChiLan1.0
WIPI2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl75,190,196 - 5,233,840 (+)EnsemblGRCh38hg38GRCh38
GRCh3875,190,233 - 5,233,855 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh3775,229,864 - 5,273,486 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3675,196,361 - 5,240,012 (+)NCBINCBI36hg18NCBI36
Celera75,188,959 - 5,232,605 (+)NCBI
Cytogenetic Map7p22.1NCBI
HuRef75,144,841 - 5,188,513 (+)NCBIHuRef
CHM1_175,229,458 - 5,273,114 (+)NCBICHM1_1
CRA_TCAGchr7v275,276,190 - 5,319,841 (+)NCBI
Wipi2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395142,615,269 - 142,655,427 (+)NCBIGRCm39mm39
GRCm39 Ensembl5142,613,453 - 142,656,343 (+)Ensembl
GRCm385142,629,533 - 142,669,672 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5142,627,698 - 142,670,588 (+)EnsemblGRCm38mm10GRCm38
MGSCv375143,105,538 - 143,145,326 (+)NCBIGRCm37mm9NCBIm37
MGSCv365142,882,057 - 142,921,846 (+)NCBImm8
Celera5139,684,840 - 139,724,789 (+)NCBICelera
Cytogenetic Map5G2NCBI
Wipi2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21211,911,369 - 11,939,799 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl1211,911,337 - 11,939,794 (-)Ensembl
Rnor_6.01213,969,704 - 13,998,134 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1213,969,586 - 13,998,172 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01215,997,274 - 16,025,704 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41212,306,563 - 12,334,993 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11212,336,492 - 12,364,921 (-)NCBI
Celera1213,695,386 - 13,723,757 (-)NCBICelera
Cytogenetic Map12p11NCBI
WIPI2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.175,467,334 - 5,510,538 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl75,467,334 - 5,510,538 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v075,446,621 - 5,488,170 (+)NCBIMhudiblu_PPA_v0panPan3
WIPI2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1612,656,469 - 12,698,623 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl612,658,239 - 12,698,734 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha614,127,107 - 14,169,430 (-)NCBI
ROS_Cfam_1.0612,792,644 - 12,834,821 (-)NCBI
UMICH_Zoey_3.1612,603,540 - 12,645,764 (-)NCBI
UNSW_CanFamBas_1.0612,536,719 - 12,578,660 (-)NCBI
UU_Cfam_GSD_1.0612,813,373 - 12,855,416 (-)NCBI
Wipi2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344140,918,058 - 140,955,730 (-)NCBI
SpeTri2.0NW_004936765909,118 - 946,788 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
WIPI2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl33,800,180 - 3,834,413 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.133,800,170 - 3,830,973 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.234,487,181 - 4,517,990 (+)NCBISscrofa10.2Sscrofa10.2susScr3
WIPI2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12816,504,557 - 16,558,670 (-)NCBI
ChlSab1.1 Ensembl2816,502,435 - 16,558,650 (-)Ensembl
Vero_WHO_p1.0NW_0236660905,423,866 - 5,470,061 (+)NCBI
Wipi2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462474028,306,655 - 28,346,430 (-)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000018120   ⟹   ENSCLAP00000017942
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495546010,090,349 - 10,130,384 (+)Ensembl
RefSeq Acc Id: XM_005397828   ⟹   XP_005397885
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495546010,090,343 - 10,130,761 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005397829   ⟹   XP_005397886
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495546010,090,344 - 10,130,761 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005397830   ⟹   XP_005397887
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495546010,090,344 - 10,132,724 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005397831   ⟹   XP_005397888
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495546010,090,348 - 10,129,624 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005397833   ⟹   XP_005397890
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495546010,090,349 - 10,129,624 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013521133   ⟹   XP_013376587
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495546010,115,443 - 10,130,761 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013521134   ⟹   XP_013376588
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495546010,099,688 - 10,130,761 (+)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: XP_005397885   ⟸   XM_005397828
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_005397887   ⟸   XM_005397830
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_005397886   ⟸   XM_005397829
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_005397888   ⟸   XM_005397831
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_005397890   ⟸   XM_005397833
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_013376588   ⟸   XM_013521134
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: XP_013376587   ⟸   XM_013521133
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: ENSCLAP00000017942   ⟸   ENSCLAT00000018120


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000012307 Ensembl, ENTREZGENE
Ensembl Protein ENSCLAP00000017942 ENTREZGENE
Ensembl Transcript ENSCLAT00000018120 ENTREZGENE
NCBI Gene Wipi2 ENTREZGENE