Sh3gl2 (SH3 domain containing GRB2 like 2, endophilin A1) - Rat Genome Database

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Gene: Sh3gl2 (SH3 domain containing GRB2 like 2, endophilin A1) Chinchilla lanigera
Analyze
Symbol: Sh3gl2
Name: SH3 domain containing GRB2 like 2, endophilin A1
RGD ID: 8856463
Description: ENCODES a protein that exhibits identical protein binding (ortholog); lipid binding (ortholog); protein kinase binding (ortholog); INVOLVED IN cellular response to brain-derived neurotrophic factor stimulus (ortholog); dendrite extension (ortholog); lipid tube assembly (ortholog); PARTICIPATES IN clathrin-dependent synaptic vesicle endocytosis; ASSOCIATED WITH genetic disease (ortholog); visual epilepsy (ortholog); FOUND IN basal dendrite (ortholog); early endosome (ortholog); glutamatergic synapse (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: endophilin-A1; SH3-domain GRB2-like 2
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543420,331,779 - 20,381,376 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495543420,332,727 - 20,381,320 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Sh3gl2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543420,331,779 - 20,381,376 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495543420,332,727 - 20,381,320 (+)NCBIChiLan1.0ChiLan1.0
SH3GL2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38917,579,066 - 17,797,124 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl917,579,066 - 17,797,124 (+)EnsemblGRCh38hg38GRCh38
GRCh37917,579,064 - 17,797,122 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36917,569,194 - 17,787,122 (+)NCBINCBI36Build 36hg18NCBI36
Build 34917,569,193 - 17,787,120NCBI
Celera917,507,463 - 17,725,658 (+)NCBICelera
Cytogenetic Map9p22.2NCBI
HuRef917,541,205 - 17,759,965 (+)NCBIHuRef
CHM1_1917,579,359 - 17,797,531 (+)NCBICHM1_1
T2T-CHM13v2.0917,591,797 - 17,809,924 (+)NCBIT2T-CHM13v2.0
Sh3gl2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39485,123,663 - 85,307,617 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl485,123,363 - 85,557,432 (+)EnsemblGRCm39 Ensembl
GRCm38485,205,456 - 85,389,380 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl485,205,126 - 85,639,195 (+)EnsemblGRCm38mm10GRCm38
MGSCv37484,851,360 - 85,035,284 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36484,676,687 - 84,860,611 (+)NCBIMGSCv36mm8
Celera483,721,182 - 83,903,108 (+)NCBICelera
Cytogenetic Map4C4NCBI
cM Map440.23NCBI
Sh3gl2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85104,699,270 - 104,874,724 (+)NCBIGRCr8
mRatBN7.2599,653,189 - 99,827,500 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl599,653,152 - 100,113,843 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5102,036,367 - 102,216,379 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05103,824,073 - 103,998,825 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05103,847,211 - 104,027,230 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05103,479,767 - 103,654,507 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5103,479,767 - 103,654,247 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05107,479,270 - 107,653,523 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45104,129,280 - 104,308,317 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.15104,300,491 - 104,313,320 (+)NCBI
Celera598,159,729 - 98,334,521 (+)NCBICelera
Cytogenetic Map5q31NCBI
SH3GL2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v211106,761,688 - 106,981,117 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan19106,767,634 - 106,987,062 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0917,386,298 - 17,605,722 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1917,878,860 - 18,097,579 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl918,045,198 - 18,097,579 (+)Ensemblpanpan1.1panPan2
SH3GL2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11137,720,793 - 37,769,027 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1137,577,053 - 37,767,572 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1136,210,473 - 36,429,450 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01138,479,939 - 38,699,050 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1138,479,865 - 38,844,393 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11137,183,251 - 37,402,158 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01136,975,724 - 37,194,721 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01137,613,946 - 37,832,890 (+)NCBIUU_Cfam_GSD_1.0
SH3GL2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1205,081,231 - 205,285,364 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11205,081,227 - 205,285,359 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21228,802,236 - 229,005,151 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SH3GL2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11261,862,997 - 62,085,254 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1261,862,943 - 61,917,315 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603850,001,458 - 50,229,863 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Sh3gl2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473621,554,969 - 21,716,877 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473621,554,950 - 21,715,522 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSCLAT00000018213   ⟹   ENSCLAP00000018035
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495543420,331,779 - 20,379,979 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000018214   ⟹   ENSCLAP00000018036
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495543420,332,488 - 20,381,376 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000018215   ⟹   ENSCLAP00000018037
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495543420,332,727 - 20,370,286 (+)Ensembl
RefSeq Acc Id: XM_013516394   ⟹   XP_013371848
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495543420,332,727 - 20,381,320 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013371848 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000018035.1
  ENSCLAP00000018036
  ENSCLAP00000018036.1
  ENSCLAP00000018037.1
RefSeq Acc Id: XP_013371848   ⟸   XM_013516394
- UniProtKB: A0A8C2VQA2 (UniProtKB/TrEMBL),   A0A8C2VTA3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000018035   ⟸   ENSCLAT00000018213
RefSeq Acc Id: ENSCLAP00000018036   ⟸   ENSCLAT00000018214
RefSeq Acc Id: ENSCLAP00000018037   ⟸   ENSCLAT00000018215
Protein Domains
BAR   SH3


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000012375 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000018213.1 UniProtKB/TrEMBL
  ENSCLAT00000018214 ENTREZGENE
  ENSCLAT00000018214.1 UniProtKB/TrEMBL
  ENSCLAT00000018215.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.1270.60 UniProtKB/TrEMBL
  SH3 Domains UniProtKB/TrEMBL
InterPro AH/BAR_dom_sf UniProtKB/TrEMBL
  BAR_dom UniProtKB/TrEMBL
  Endophilin_A_SH3 UniProtKB/TrEMBL
  SH3-like_dom_sf UniProtKB/TrEMBL
  SH3_domain UniProtKB/TrEMBL
NCBI Gene Sh3gl2 ENTREZGENE
PANTHER ENDOPHILIN-A1 UniProtKB/TrEMBL
  SH3 DOMAIN-CONTAINING UniProtKB/TrEMBL
Pfam BAR UniProtKB/TrEMBL
  SH3_1 UniProtKB/TrEMBL
PRINTS SH3DOMAIN UniProtKB/TrEMBL
  SPECTRNALPHA UniProtKB/TrEMBL
PROSITE BAR UniProtKB/TrEMBL
  SH3 UniProtKB/TrEMBL
SMART BAR UniProtKB/TrEMBL
  SH3 UniProtKB/TrEMBL
Superfamily-SCOP SSF103657 UniProtKB/TrEMBL
  SSF50044 UniProtKB/TrEMBL
UniProt A0A8C2VMW2_CHILA UniProtKB/TrEMBL
  A0A8C2VQA2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C2VTA3 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-03 Sh3gl2  SH3 domain containing GRB2 like 2, endophilin A1    SH3-domain GRB2-like 2  Symbol and/or name change 5135510 APPROVED