Mical1 (microtubule associated monooxygenase, calponin and LIM domain containing 1) - Rat Genome Database

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Gene: Mical1 (microtubule associated monooxygenase, calponin and LIM domain containing 1) Chinchilla lanigera
Analyze
Symbol: Mical1
Name: microtubule associated monooxygenase, calponin and LIM domain containing 1
RGD ID: 8856337
Description: ENCODES a protein that exhibits actin binding (ortholog); FAD binding (ortholog); monooxygenase activity (ortholog); INVOLVED IN actin filament depolymerization (ortholog); negative regulation of apoptotic process (ortholog); negative regulation of protein phosphorylation (ortholog); ASSOCIATED WITH Charcot-Marie-Tooth disease type 4 (ortholog); Familial Temporal Epilepsy (ortholog); familial temporal lobe epilepsy 1 (ortholog); FOUND IN actin filament (ortholog); cytoplasm (ortholog); cytosol (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: protein-methionine sulfoxide oxidase MICAL1
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541134,484,653 - 34,493,877 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541134,484,536 - 34,495,154 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
Mical1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541134,484,653 - 34,493,877 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541134,484,536 - 34,495,154 (-)NCBIChiLan1.0ChiLan1.0
MICAL1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh386109,444,062 - 109,465,968 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl6109,444,062 - 109,465,968 (-)EnsemblGRCh38hg38GRCh38
GRCh376109,765,265 - 109,787,171 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 366109,871,958 - 109,883,883 (-)NCBINCBI36Build 36hg18NCBI36
Celera6110,511,849 - 110,523,786 (-)NCBICelera
Cytogenetic Map6q21NCBI
HuRef6107,331,351 - 107,343,303 (-)NCBIHuRef
CHM1_16110,028,348 - 110,040,287 (-)NCBICHM1_1
T2T-CHM13v2.06110,622,100 - 110,644,006 (-)NCBIT2T-CHM13v2.0
Mical1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391041,351,693 - 41,363,026 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1041,352,310 - 41,363,028 (+)EnsemblGRCm39 Ensembl
GRCm381041,475,860 - 41,487,030 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1041,476,314 - 41,487,032 (+)EnsemblGRCm38mm10GRCm38
MGSCv371041,196,120 - 41,206,836 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361041,164,793 - 41,175,445 (+)NCBIMGSCv36mm8
Celera1042,362,567 - 42,373,283 (+)NCBICelera
Cytogenetic Map10B1NCBI
cM Map1022.41NCBI
Mical1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82046,547,983 - 46,568,487 (+)NCBIGRCr8
mRatBN7.22044,974,137 - 44,986,089 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2044,974,138 - 44,986,089 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2046,691,647 - 46,703,594 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02046,341,822 - 46,353,769 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02047,048,455 - 47,060,565 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02046,199,981 - 46,211,930 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2046,199,981 - 46,211,930 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02047,892,301 - 47,904,250 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42045,436,685 - 45,448,634 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12045,458,091 - 45,471,641 (+)NCBI
Celera2054,967,522 - 54,979,475 (-)NCBICelera
Cytogenetic Map20q12NCBI
MICAL1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v25129,452,698 - 129,474,752 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan16127,344,031 - 127,365,964 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v06107,247,084 - 107,269,138 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.16111,295,548 - 111,307,528 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl6111,295,548 - 111,317,214 (-)Ensemblpanpan1.1panPan2
MICAL1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11266,350,459 - 66,358,391 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1266,350,427 - 66,360,615 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1266,170,362 - 66,179,716 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01267,233,628 - 67,242,331 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1267,233,594 - 67,242,261 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11266,583,586 - 66,592,939 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01266,432,435 - 66,441,766 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01266,704,165 - 66,713,547 (-)NCBIUU_Cfam_GSD_1.0
Mical1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404946101,293,750 - 101,304,544 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365645,568,767 - 5,577,915 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365645,568,613 - 5,579,402 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MICAL1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl175,511,693 - 75,522,765 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1175,511,692 - 75,522,760 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2184,789,661 - 84,800,700 (-)NCBISscrofa10.2Sscrofa10.2susScr3
MICAL1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11364,400,908 - 64,424,096 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1364,400,152 - 64,427,366 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604036,703,949 - 36,715,881 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Mical1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624916701,249 - 710,148 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624916701,118 - 712,254 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000017917   ⟹   ENSCLAP00000017742
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495541134,484,653 - 34,493,877 (-)Ensembl
RefSeq Acc Id: ENSCLAT00000017918   ⟹   ENSCLAP00000017743
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495541134,484,680 - 34,493,667 (-)Ensembl
RefSeq Acc Id: XM_013510817   ⟹   XP_013366271
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541134,484,536 - 34,495,154 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013510818   ⟹   XP_013366272
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541134,484,536 - 34,495,154 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013510819   ⟹   XP_013366273
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541134,484,536 - 34,494,334 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013510821   ⟹   XP_013366275
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541134,484,536 - 34,494,334 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013366271 (Get FASTA)   NCBI Sequence Viewer  
  XP_013366272 (Get FASTA)   NCBI Sequence Viewer  
  XP_013366273 (Get FASTA)   NCBI Sequence Viewer  
  XP_013366275 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000017742
  ENSCLAP00000017742.1
  ENSCLAP00000017743.1
Reference Protein Sequences
RefSeq Acc Id: XP_013366272   ⟸   XM_013510818
- Peptide Label: isoform X2
- UniProtKB: A0A8C2VUM6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013366271   ⟸   XM_013510817
- Peptide Label: isoform X1
- UniProtKB: A0A8C2VUM6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013366275   ⟸   XM_013510821
- Peptide Label: isoform X1
- UniProtKB: A0A8C2VUM6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013366273   ⟸   XM_013510819
- Peptide Label: isoform X1
- UniProtKB: A0A8C2VUM6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000017743   ⟸   ENSCLAT00000017918
RefSeq Acc Id: ENSCLAP00000017742   ⟸   ENSCLAT00000017917
Protein Domains
bMERB   Calponin-homology (CH)   LIM zinc-binding


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000012170 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000017917 ENTREZGENE
  ENSCLAT00000017917.1 UniProtKB/TrEMBL
  ENSCLAT00000017918.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.418.10 UniProtKB/TrEMBL
  3.50.50.60 UniProtKB/TrEMBL
  Cysteine Rich Protein UniProtKB/TrEMBL
InterPro bMERB_dom UniProtKB/TrEMBL
  CH-domain UniProtKB/TrEMBL
  CH_dom_sf UniProtKB/TrEMBL
  FAD-bd UniProtKB/TrEMBL
  FAD/NAD-bd_sf UniProtKB/TrEMBL
  Znf_LIM UniProtKB/TrEMBL
NCBI Gene Mical1 ENTREZGENE
PANTHER [F-ACTIN]-MONOOXYGENASE MICAL1 UniProtKB/TrEMBL
  CALPONIN HOMOLOGY DOMAIN-CONTAINING PROTEIN DDB_G0272472-RELATED UniProtKB/TrEMBL
Pfam DUF3585 UniProtKB/TrEMBL
  FAD_binding_3 UniProtKB/TrEMBL
  LIM UniProtKB/TrEMBL
  PF00307 UniProtKB/TrEMBL
PROSITE BMERB UniProtKB/TrEMBL
  LIM_DOMAIN_1 UniProtKB/TrEMBL
  LIM_DOMAIN_2 UniProtKB/TrEMBL
  PS50021 UniProtKB/TrEMBL
SMART DUF3585 UniProtKB/TrEMBL
  LIM UniProtKB/TrEMBL
  SM00033 UniProtKB/TrEMBL
Superfamily-SCOP Glucocorticoid receptor-like (DNA-binding domain) UniProtKB/TrEMBL
  SSF47576 UniProtKB/TrEMBL
  SSF51905 UniProtKB/TrEMBL
UniProt A0A8C2VMF5_CHILA UniProtKB/TrEMBL
  A0A8C2VUM6 ENTREZGENE, UniProtKB/TrEMBL