Card10 (caspase recruitment domain family member 10) - Rat Genome Database

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Gene: Card10 (caspase recruitment domain family member 10) Chinchilla lanigera
Analyze
Symbol: Card10
Name: caspase recruitment domain family member 10
RGD ID: 8855875
Description: INVOLVED IN negative regulation of cell migration involved in sprouting angiogenesis (ortholog); positive regulation of protein localization to nucleus (ortholog); ASSOCIATED WITH adenylosuccinase lyase deficiency (ortholog); Emery-Dreifuss muscular dystrophy (ortholog); genetic disease (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: caspase recruitment domain family, member 10; caspase recruitment domain-containing protein 10
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541323,920,405 - 23,946,135 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541323,920,929 - 23,946,109 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
Card10
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541323,920,405 - 23,946,135 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541323,920,929 - 23,946,109 (-)NCBIChiLan1.0ChiLan1.0
CARD10
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382237,490,362 - 37,519,415 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2237,490,362 - 37,519,542 (-)EnsemblGRCh38hg38GRCh38
GRCh372237,886,400 - 37,915,422 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362236,216,346 - 36,245,156 (-)NCBINCBI36Build 36hg18NCBI36
Build 342236,210,900 - 36,239,710NCBI
Celera2221,687,204 - 21,715,894 (-)NCBICelera
Cytogenetic Map22q13.1NCBI
HuRef2220,852,627 - 20,881,868 (-)NCBIHuRef
CHM1_12237,845,198 - 37,873,529 (-)NCBICHM1_1
T2T-CHM13v2.02237,951,227 - 37,980,107 (-)NCBIT2T-CHM13v2.0
Card10
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391578,659,323 - 78,687,261 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1578,659,338 - 78,687,242 (-)EnsemblGRCm39 Ensembl
GRCm381578,775,123 - 78,803,072 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1578,775,138 - 78,803,042 (-)EnsemblGRCm38mm10GRCm38
MGSCv371578,605,566 - 78,633,472 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361578,602,391 - 78,630,297 (-)NCBIMGSCv36mm8
Celera1580,230,970 - 80,251,729 (-)NCBICelera
Cytogenetic Map15E1NCBI
cM Map1537.7NCBI
Card10
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87112,210,944 - 112,252,044 (-)NCBIGRCr8
mRatBN7.27110,330,460 - 110,371,551 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7110,330,408 - 110,359,224 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7112,081,981 - 112,109,401 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07114,305,511 - 114,332,931 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07114,273,289 - 114,301,146 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.07119,998,639 - 120,028,632 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7119,999,472 - 120,027,026 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07119,990,231 - 120,020,339 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47116,737,928 - 116,766,959 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.17116,772,155 - 116,838,884 (-)NCBI
Celera7106,667,220 - 106,693,633 (-)NCBICelera
Cytogenetic Map7q34NCBI
CARD10
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22347,349,856 - 47,381,343 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12250,038,456 - 50,069,942 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02218,407,374 - 18,437,728 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12236,240,101 - 36,268,565 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2236,240,898 - 36,268,546 (-)Ensemblpanpan1.1panPan2
CARD10
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11027,055,293 - 27,080,109 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1027,053,915 - 27,079,341 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1027,008,755 - 27,034,511 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01027,846,054 - 27,871,811 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1027,845,644 - 27,871,807 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11027,567,955 - 27,593,683 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01027,876,590 - 27,902,328 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01028,054,334 - 28,080,088 (+)NCBIUU_Cfam_GSD_1.0
Card10
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494510,509,715 - 10,534,764 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364923,522,533 - 3,545,279 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364923,520,129 - 3,545,178 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CARD10
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl510,284,139 - 10,316,720 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1510,290,697 - 10,317,224 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
CARD10
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11920,198,093 - 20,227,523 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1920,198,878 - 20,227,321 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666045105,599,686 - 105,630,192 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Card10
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475210,366,653 - 10,390,957 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475210,366,698 - 10,390,799 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSCLAT00000025017   ⟹   ENSCLAP00000024777
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495541323,920,405 - 23,946,135 (-)Ensembl
RefSeq Acc Id: XM_005379206   ⟹   XP_005379263
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541323,921,794 - 23,946,109 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013511650   ⟹   XP_013367104
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541323,920,929 - 23,946,109 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005379263 (Get FASTA)   NCBI Sequence Viewer  
  XP_013367104 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000024777
  ENSCLAP00000024777.1
RefSeq Acc Id: XP_005379263   ⟸   XM_005379206
- Peptide Label: isoform X2
- UniProtKB: A0A8C2W3T6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013367104   ⟸   XM_013511650
- Peptide Label: isoform X1
- UniProtKB: A0A8C2W3T6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000024777   ⟸   ENSCLAT00000025017
Protein Domains
CARD


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000017011 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000025017 ENTREZGENE
  ENSCLAT00000025017.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.533.10 UniProtKB/TrEMBL
  3.40.50.300 UniProtKB/TrEMBL
  SH3 Domains UniProtKB/TrEMBL
InterPro CARD UniProtKB/TrEMBL
  CARD_CARD10 UniProtKB/TrEMBL
  DEATH-like_dom_sf UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
NCBI Gene Card10 ENTREZGENE
PANTHER CASPASE RECRUITMENT DOMAIN FAMILY UniProtKB/TrEMBL
  CASPASE RECRUITMENT DOMAIN-CONTAINING PROTEIN 10 UniProtKB/TrEMBL
Pfam CARD UniProtKB/TrEMBL
PROSITE CARD UniProtKB/TrEMBL
Superfamily-SCOP SSF47986 UniProtKB/TrEMBL
UniProt A0A8C2W3T6 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-16 Card10  caspase recruitment domain family member 10    caspase recruitment domain family, member 10  Symbol and/or name change 5135510 APPROVED