Map1a (microtubule associated protein 1A) - Rat Genome Database

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Gene: Map1a (microtubule associated protein 1A) Chinchilla lanigera
Analyze
Symbol: Map1a
Name: microtubule associated protein 1A
RGD ID: 8853376
Description: ENCODES a protein that exhibits actin binding (ortholog); collagen binding (ortholog); cytoskeletal anchor activity (ortholog); INVOLVED IN anterograde axonal protein transport (ortholog); associative learning (ortholog); memory (ortholog); ASSOCIATED WITH Bloom syndrome (ortholog); colon cancer (ortholog); genetic disease (ortholog); FOUND IN axon (ortholog); axon initial segment (ortholog); cytoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: microtubule-associated protein 1A
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541610,053,010 - 10,071,421 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541610,052,964 - 10,073,318 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References


Genomics

Comparative Map Data
Map1a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541610,053,010 - 10,071,421 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541610,052,964 - 10,073,318 (+)NCBIChiLan1.0ChiLan1.0
MAP1A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1543,510,958 - 43,531,620 (+)EnsemblGRCh38hg38GRCh38
GRCh381543,517,608 - 43,531,611 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371543,809,806 - 43,823,809 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361541,597,098 - 41,611,110 (+)NCBINCBI36hg18NCBI36
Build 341541,597,132 - 41,611,109NCBI
Celera1520,580,478 - 20,594,490 (+)NCBI
Cytogenetic Map15q15.3NCBI
HuRef1520,657,744 - 20,671,755 (+)NCBIHuRef
CHM1_11543,928,513 - 43,942,525 (+)NCBICHM1_1
Map1a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392121,119,608 - 121,141,313 (+)NCBIGRCm39mm39
GRCm39 Ensembl2121,120,081 - 121,141,313 (+)Ensembl
GRCm382121,289,590 - 121,310,832 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2121,289,600 - 121,310,832 (+)EnsemblGRCm38mm10GRCm38
MGSCv372121,115,338 - 121,136,568 (+)NCBIGRCm37mm9NCBIm37
MGSCv362121,115,336 - 121,136,568 (+)NCBImm8
Celera2122,440,757 - 122,461,952 (+)NCBICelera
Cytogenetic Map2E5NCBI
cM Map260.37NCBI
Map1a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.23108,263,217 - 108,283,936 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl3108,263,151 - 108,282,899 (+)Ensembl
Rnor_6.03113,251,918 - 113,272,193 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3113,251,778 - 113,272,186 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03119,791,740 - 119,811,429 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43108,097,119 - 108,111,060 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.13107,996,094 - 108,010,036 (+)NCBI
Celera3107,171,142 - 107,185,083 (+)NCBICelera
Cytogenetic Map3q35NCBI
MAP1A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11540,627,099 - 40,647,752 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1540,627,099 - 40,647,752 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01522,472,641 - 22,493,293 (+)NCBIMhudiblu_PPA_v0panPan3
MAP1A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13010,361,871 - 10,382,780 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3010,361,909 - 10,381,376 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3010,420,363 - 10,441,256 (+)NCBI
ROS_Cfam_1.03010,498,020 - 10,519,195 (+)NCBI
ROS_Cfam_1.0 Ensembl3010,497,473 - 10,519,193 (+)Ensembl
UMICH_Zoey_3.13010,413,992 - 10,434,829 (+)NCBI
UNSW_CanFamBas_1.03010,535,945 - 10,556,802 (+)NCBI
UU_Cfam_GSD_1.03010,655,574 - 10,676,454 (+)NCBI
Map1a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864088,837,633 - 88,858,797 (+)NCBI
SpeTri2.0NW_0049364716,685,565 - 6,706,860 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MAP1A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1127,916,644 - 127,936,955 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11127,916,639 - 127,936,952 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21142,763,146 - 142,783,427 (-)NCBISscrofa10.2Sscrofa10.2susScr3
MAP1A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12639,469,013 - 39,489,666 (-)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl2639,468,222 - 39,489,613 (-)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666048101,524,663 - 101,545,324 (+)NCBIVero_WHO_p1.0
Map1a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462480410,611,657 - 10,632,199 (+)NCBIHetGla_female_1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000010634   ⟹   ENSCLAP00000010503
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495541610,053,010 - 10,071,421 (+)Ensembl
RefSeq Acc Id: XM_005381389   ⟹   XP_005381446
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541610,052,964 - 10,073,318 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005381391   ⟹   XP_005381448
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541610,059,343 - 10,073,318 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005381446 (Get FASTA)   NCBI Sequence Viewer  
  XP_005381448 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005381446   ⟸   XM_005381389
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_005381448   ⟸   XM_005381391
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSCLAP00000010503   ⟸   ENSCLAT00000010634


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000007250 Ensembl, ENTREZGENE
Ensembl Protein ENSCLAP00000010503 ENTREZGENE
Ensembl Transcript ENSCLAT00000010634 ENTREZGENE
NCBI Gene Map1a ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-16 Map1a  microtubule associated protein 1A    microtubule-associated protein 1A  Symbol and/or name change 5135510 APPROVED