Prickle1 (prickle planar cell polarity protein 1) - Rat Genome Database

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Gene: Prickle1 (prickle planar cell polarity protein 1) Chinchilla lanigera
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Symbol: Prickle1
Name: prickle planar cell polarity protein 1
RGD ID: 8853213
Description: ENCODES a protein that exhibits transcription factor binding (ortholog); INVOLVED IN aorta development (ortholog); coronary vasculature development (ortholog); negative regulation of canonical Wnt signaling pathway (ortholog); PARTICIPATES IN Wnt signaling, the planar cell polarity pathway; ASSOCIATED WITH benign epilepsy with centrotemporal spikes (ortholog); epilepsy (ortholog); fetal akinesia deformation sequence syndrome 1 (ortholog); FOUND IN cytosol (ortholog); nuclear membrane (ortholog); nucleus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: prickle homolog 1; prickle-like protein 1
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555001,897,912 - 1,990,875 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555001,897,899 - 1,990,791 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytosol  (ISO)
nuclear membrane  (ISO)
nucleus  (ISO)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References


Genomics

Comparative Map Data
Prickle1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555001,897,912 - 1,990,875 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555001,897,899 - 1,990,791 (-)NCBIChiLan1.0ChiLan1.0
PRICKLE1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1242,456,757 - 42,590,355 (-)EnsemblGRCh38hg38GRCh38
GRCh381242,456,757 - 42,589,755 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371242,850,559 - 42,983,548 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361241,139,341 - 41,269,745 (-)NCBINCBI36hg18NCBI36
Build 341241,139,340 - 41,269,745NCBI
Celera1241,653,996 - 41,785,497 (-)NCBI
Cytogenetic Map12q12NCBI
HuRef1239,878,936 - 40,010,599 (-)NCBIHuRef
CHM1_11242,818,791 - 42,950,331 (-)NCBICHM1_1
Prickle1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391593,396,992 - 93,494,147 (-)NCBIGRCm39mm39
GRCm39 Ensembl1593,396,995 - 93,493,772 (-)Ensembl
GRCm381593,499,111 - 93,596,266 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1593,499,114 - 93,595,891 (-)EnsemblGRCm38mm10GRCm38
MGSCv371593,329,545 - 93,426,322 (-)NCBIGRCm37mm9NCBIm37
MGSCv361593,327,294 - 93,424,071 (-)NCBImm8
Celera1595,647,051 - 95,744,081 (-)NCBICelera
Cytogenetic Map15E3NCBI
Prickle1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.27124,639,142 - 124,735,027 (-)NCBImRatBN7.2
Rnor_6.0 Ensembl7134,702,964 - 134,722,215 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.07134,702,964 - 134,799,437 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.07134,370,195 - 134,466,674 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47131,967,220 - 131,986,187 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.17132,044,813 - 132,052,370 (-)NCBI
Celera7121,036,572 - 121,055,537 (-)NCBICelera
Cytogenetic Map7q35NCBI
PRICKLE1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11247,100,352 - 47,126,116 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1247,100,393 - 47,126,102 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01246,127,673 - 46,262,333 (+)NCBIMhudiblu_PPA_v0panPan3
PRICKLE1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12711,327,086 - 11,437,799 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2711,426,647 - 11,437,303 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2734,864,577 - 34,975,269 (-)NCBI
ROS_Cfam_1.02711,522,959 - 11,634,418 (+)NCBI
UMICH_Zoey_3.12711,336,611 - 11,448,200 (+)NCBI
UNSW_CanFamBas_1.02711,366,003 - 11,477,284 (+)NCBI
UU_Cfam_GSD_1.02735,111,079 - 35,222,648 (-)NCBI
Prickle1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494571,894,685 - 71,999,671 (+)NCBI
SpeTri2.0NW_0049365121,165,159 - 1,270,138 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PRICKLE1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl573,707,022 - 73,826,431 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1573,707,026 - 73,826,529 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2576,446,397 - 76,452,034 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PRICKLE1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11138,696,771 - 38,819,324 (-)NCBI
ChlSab1.1 Ensembl1138,694,602 - 38,718,519 (-)Ensembl
Vero_WHO_p1.0NW_023666037207,742,821 - 207,865,507 (+)NCBI
Prickle1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462481610,087,866 - 10,185,004 (+)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000005705   ⟹   ENSCLAP00000005604
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049555001,897,912 - 1,915,587 (-)Ensembl
RefSeq Acc Id: ENSCLAT00000005706   ⟹   ENSCLAP00000005605
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049555001,899,246 - 1,990,875 (-)Ensembl
RefSeq Acc Id: XM_005406578   ⟹   XP_005406635
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555001,897,899 - 1,990,791 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013505663   ⟹   XP_013361117
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555001,897,899 - 1,970,991 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013505664   ⟹   XP_013361118
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555001,897,899 - 1,915,587 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005406635 (Get FASTA)   NCBI Sequence Viewer  
  XP_013361117 (Get FASTA)   NCBI Sequence Viewer  
  XP_013361118 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005406635   ⟸   XM_005406578
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_013361117   ⟸   XM_013505663
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_013361118   ⟸   XM_013505664
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSCLAP00000005605   ⟸   ENSCLAT00000005706
RefSeq Acc Id: ENSCLAP00000005604   ⟸   ENSCLAT00000005705


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000003980 Ensembl, ENTREZGENE
Ensembl Protein ENSCLAP00000005604 ENTREZGENE
  ENSCLAP00000005605 ENTREZGENE
Ensembl Transcript ENSCLAT00000005705 ENTREZGENE
  ENSCLAT00000005706 ENTREZGENE
NCBI Gene Prickle1 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-03 Prickle1  prickle planar cell polarity protein 1    prickle homolog 1  Symbol and/or name change 5135510 APPROVED
2015-08-25 Prickle1  prickle homolog 1    prickle homolog 1 (Drosophila)  Symbol and/or name change 5135510 APPROVED