Pitpnm3 (PITPNM family member 3) - Rat Genome Database

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Gene: Pitpnm3 (PITPNM family member 3) Chinchilla lanigera
Analyze
Symbol: Pitpnm3
Name: PITPNM family member 3
RGD ID: 8852371
Description: ENCODES a protein that exhibits calcium ion binding (ortholog); receptor tyrosine kinase binding (ortholog); ASSOCIATED WITH arteriovenous malformations of the brain (ortholog); cone dystrophy (ortholog); cone-rod dystrophy (ortholog); FOUND IN cell body (ortholog); cell projection (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: membrane-associated phosphatidylinositol transfer protein 3
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495546711,973,181 - 12,051,593 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495546711,973,181 - 12,051,388 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Pitpnm3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495546711,973,181 - 12,051,593 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495546711,973,181 - 12,051,388 (-)NCBIChiLan1.0ChiLan1.0
PITPNM3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38176,451,263 - 6,556,555 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl176,451,263 - 6,556,555 (-)EnsemblGRCh38hg38GRCh38
GRCh37176,354,583 - 6,459,875 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36176,299,347 - 6,400,601 (-)NCBINCBI36Build 36hg18NCBI36
Build 34176,299,348 - 6,400,601NCBI
Celera176,375,097 - 6,480,841 (-)NCBICelera
Cytogenetic Map17p13.2-p13.1NCBI
HuRef176,249,941 - 6,355,026 (-)NCBIHuRef
CHM1_1176,364,014 - 6,469,476 (-)NCBICHM1_1
T2T-CHM13v2.0176,350,993 - 6,456,410 (-)NCBIT2T-CHM13v2.0
Pitpnm3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391171,938,354 - 72,026,715 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1171,938,354 - 72,026,604 (-)EnsemblGRCm39 Ensembl
GRCm381172,047,528 - 72,135,889 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1172,047,528 - 72,135,778 (-)EnsemblGRCm38mm10GRCm38
MGSCv371171,861,030 - 71,949,391 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361171,863,723 - 71,951,973 (-)NCBIMGSCv36mm8
Celera1179,572,423 - 79,659,844 (-)NCBICelera
Cytogenetic Map11B4NCBI
cM Map1143.82NCBI
Pitpnm3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81057,173,230 - 57,265,186 (-)NCBIGRCr8
mRatBN7.21056,674,697 - 56,766,552 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1056,676,261 - 56,766,584 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01058,618,679 - 58,722,679 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1058,618,645 - 58,693,754 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01058,359,697 - 58,463,090 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41058,903,643 - 58,931,871 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11058,917,384 - 58,945,494 (-)NCBI
Celera1055,805,606 - 55,881,692 (-)NCBICelera
Cytogenetic Map10q24NCBI
PITPNM3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21914,052,295 - 14,158,326 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11716,018,352 - 16,124,411 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0176,492,567 - 6,595,645 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1176,481,590 - 6,584,379 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl176,481,590 - 6,584,379 (-)Ensemblpanpan1.1panPan2
PITPNM3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1530,772,794 - 30,820,725 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl530,754,963 - 30,819,443 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha530,891,749 - 30,952,406 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0530,873,758 - 30,922,408 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl530,861,017 - 30,922,401 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1530,826,593 - 30,887,220 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0530,785,647 - 30,846,266 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0530,958,960 - 31,019,619 (+)NCBIUU_Cfam_GSD_1.0
Pitpnm3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560254,371,513 - 54,448,471 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366771,430,391 - 1,529,484 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366771,451,974 - 1,528,864 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PITPNM3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1250,742,773 - 50,898,331 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11250,806,302 - 50,898,316 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21252,805,485 - 52,896,806 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PITPNM3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1165,830,107 - 5,934,979 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl165,834,088 - 5,916,697 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605915,554,945 - 15,661,662 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pitpnm3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247867,485,092 - 7,567,993 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247867,484,829 - 7,568,020 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000016964   ⟹   ENSCLAP00000016800
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495546711,973,181 - 12,051,593 (-)Ensembl
RefSeq Acc Id: ENSCLAT00000016965   ⟹   ENSCLAP00000016801
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495546711,976,948 - 12,049,457 (-)Ensembl
RefSeq Acc Id: ENSCLAT00000016966   ⟹   ENSCLAP00000016802
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495546711,976,948 - 12,041,151 (-)Ensembl
RefSeq Acc Id: XM_005399663   ⟹   XP_005399720
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495546711,973,181 - 12,051,388 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013522224   ⟹   XP_013377678
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495546711,973,181 - 12,051,388 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005399720 (Get FASTA)   NCBI Sequence Viewer  
  XP_013377678 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000016800
  ENSCLAP00000016800.1
  ENSCLAP00000016801.1
  ENSCLAP00000016802.1
Reference Protein Sequences
RefSeq Acc Id: XP_005399720   ⟸   XM_005399663
- Peptide Label: isoform X1
- UniProtKB: A0A8C2VK37 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013377678   ⟸   XM_013522224
- Peptide Label: isoform X2
- UniProtKB: A0A8C2VK37 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000016801   ⟸   ENSCLAT00000016965
RefSeq Acc Id: ENSCLAP00000016800   ⟸   ENSCLAT00000016964
RefSeq Acc Id: ENSCLAP00000016802   ⟸   ENSCLAT00000016966
Protein Domains
DDHD


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000011528 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000016964 ENTREZGENE
  ENSCLAT00000016964.1 UniProtKB/TrEMBL
  ENSCLAT00000016965.1 UniProtKB/TrEMBL
  ENSCLAT00000016966.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.1000 UniProtKB/TrEMBL
InterPro DDHD_dom UniProtKB/TrEMBL
  HAD-like_sf UniProtKB/TrEMBL
  HAD_sf UniProtKB/TrEMBL
  LNS2/PITP UniProtKB/TrEMBL
NCBI Gene Pitpnm3 ENTREZGENE
PANTHER MEMBRANE-ASSOCIATED PHOSPHATIDYLINOSITOL TRANSFER PROTEIN 3 UniProtKB/TrEMBL
  PA-PL1 PHOSPHOLIPASE FAMILY UniProtKB/TrEMBL
Pfam DDHD UniProtKB/TrEMBL
PROSITE DDHD UniProtKB/TrEMBL
SMART DDHD UniProtKB/TrEMBL
  LNS2 UniProtKB/TrEMBL
Superfamily-SCOP SSF56784 UniProtKB/TrEMBL
UniProt A0A8C2VJZ2_CHILA UniProtKB/TrEMBL
  A0A8C2VK33_CHILA UniProtKB/TrEMBL
  A0A8C2VK37 ENTREZGENE, UniProtKB/TrEMBL