Mansc4 (MANSC domain containing 4) - Rat Genome Database

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Gene: Mansc4 (MANSC domain containing 4) Chinchilla lanigera
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Symbol: Mansc4
Name: MANSC domain containing 4
RGD ID: 8850963
Description: ASSOCIATED WITH genetic disease (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: MANSC domain-containing protein 4
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555057,111,825 - 7,118,612 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555057,077,810 - 7,119,434 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species

Genomics

Comparative Map Data
Mansc4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555057,111,825 - 7,118,612 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555057,077,810 - 7,119,434 (+)NCBIChiLan1.0ChiLan1.0
MANSC4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381227,762,427 - 27,780,236 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1227,762,427 - 27,780,236 (-)EnsemblGRCh38hg38GRCh38
GRCh371227,915,360 - 27,933,169 (-)NCBIGRCh37GRCh37hg19GRCh37
Celera1233,061,159 - 33,069,766 (-)NCBICelera
Cytogenetic Map12p11.22NCBI
HuRef1227,684,671 - 27,693,281 (-)NCBIHuRef
CHM1_11227,880,608 - 27,889,215 (-)NCBICHM1_1
T2T-CHM13v2.01227,634,144 - 27,651,950 (-)NCBIT2T-CHM13v2.0
Mansc4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396146,976,560 - 146,988,530 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl6146,976,558 - 146,988,530 (-)EnsemblGRCm39 Ensembl
GRCm386147,075,062 - 147,087,032 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6147,075,060 - 147,087,032 (-)EnsemblGRCm38mm10GRCm38
MGSCv376147,023,584 - 147,035,554 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv366147,032,232 - 147,044,202 (-)NCBIMGSCv36mm8
Celera6150,111,005 - 150,120,780 (-)NCBICelera
Cytogenetic Map6G3NCBI
cM Map677.7NCBI
Mansc4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84181,722,478 - 181,731,410 (-)NCBIGRCr8
mRatBN7.24179,991,845 - 180,000,716 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4179,991,860 - 180,001,038 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.04181,468,411 - 181,478,237 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4181,468,511 - 181,477,281 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04245,618,289 - 245,627,623 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44184,676,275 - 184,685,060 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera4168,485,351 - 168,495,182 (-)NCBICelera
Cytogenetic Map4q44NCBI
MANSC4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21069,040,904 - 69,052,717 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11269,038,691 - 69,049,114 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01258,531,753 - 58,549,560 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11261,158,489 - 61,167,621 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1261,158,615 - 61,167,381 (+)Ensemblpanpan1.1panPan2
MANSC4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12719,964,473 - 19,977,146 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2719,970,128 - 19,976,380 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2726,423,143 - 26,432,066 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02720,161,680 - 20,170,680 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2720,163,729 - 20,169,919 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12719,968,072 - 19,977,398 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02719,995,082 - 20,004,089 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02726,580,473 - 26,589,411 (-)NCBIUU_Cfam_GSD_1.0
Mansc4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494581,935,426 - 81,936,621 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049423491,334 - 2,772 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MANSC4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl545,955,090 - 45,970,274 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1545,962,175 - 45,970,957 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2549,530,285 - 49,553,859 (+)NCBISscrofa10.2Sscrofa10.2susScr3
MANSC4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11127,484,157 - 27,494,512 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660697,559,762 - 7,568,551 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Mansc4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624935268,411 - 275,779 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSCLAT00000000828   ⟹   ENSCLAP00000000791
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049555057,111,825 - 7,118,612 (+)Ensembl
RefSeq Acc Id: XM_005407155   ⟹   XP_005407212
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555057,077,810 - 7,119,434 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005407156   ⟹   XP_005407213
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555057,077,810 - 7,119,434 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005407212 (Get FASTA)   NCBI Sequence Viewer  
  XP_005407213 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000000791
  ENSCLAP00000000791.1
RefSeq Acc Id: XP_005407212   ⟸   XM_005407155
- Peptide Label: isoform X1
- UniProtKB: A0A8C2UIV5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005407213   ⟸   XM_005407156
- Peptide Label: isoform X2
- UniProtKB: A0A8C2UIV5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000000791   ⟸   ENSCLAT00000000828
Protein Domains
MANSC


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000000620 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000000828 ENTREZGENE
  ENSCLAT00000000828.1 UniProtKB/TrEMBL
InterPro MANSC_dom UniProtKB/TrEMBL
  MANSC_N UniProtKB/TrEMBL
NCBI Gene Mansc4 ENTREZGENE
PANTHER KUNITZ-TYPE PROTEASE INHIBITOR 1 UniProtKB/TrEMBL
  MANSC DOMAIN-CONTAINING PROTEIN 4 UniProtKB/TrEMBL
Pfam MANEC UniProtKB/TrEMBL
PROSITE MANSC UniProtKB/TrEMBL
SMART MANEC UniProtKB/TrEMBL
UniProt A0A8C2UIV5 ENTREZGENE, UniProtKB/TrEMBL