Fam217a (family with sequence similarity 217 member A) - Rat Genome Database

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Gene: Fam217a (family with sequence similarity 217 member A) Chinchilla lanigera
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Symbol: Fam217a
Name: family with sequence similarity 217 member A
RGD ID: 8848112
Description: ASSOCIATED WITH genetic disease (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: family with sequence similarity 217, member A
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554659,339,744 - 9,356,358 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554659,338,943 - 9,356,242 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References

Genomics

Comparative Map Data
Fam217a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554659,339,744 - 9,356,358 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554659,338,943 - 9,356,242 (+)NCBIChiLan1.0ChiLan1.0
FAM217A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3864,068,367 - 4,087,341 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl64,049,434 - 4,087,344 (-)EnsemblGRCh38hg38GRCh38
GRCh3764,068,601 - 4,079,371 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3664,013,600 - 4,024,390 (-)NCBINCBI36Build 36hg18NCBI36
Build 3464,013,600 - 4,024,390NCBI
Celera65,297,170 - 5,307,960 (-)NCBICelera
Cytogenetic Map6p25.2NCBI
HuRef63,944,956 - 3,955,675 (-)NCBIHuRef
CHM1_164,071,055 - 4,082,292 (-)NCBICHM1_1
T2T-CHM13v2.063,937,669 - 3,956,636 (-)NCBIT2T-CHM13v2.0
Fam217a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391335,093,942 - 35,108,341 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1335,093,943 - 35,108,293 (-)EnsemblGRCm39 Ensembl
GRCm381334,909,959 - 34,924,358 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1334,909,960 - 34,924,310 (-)EnsemblGRCm38mm10GRCm38
MGSCv371335,001,833 - 35,011,861 (-)NCBIGRCm37MGSCv37mm9NCBIm37
Celera1336,036,752 - 36,046,780 (-)NCBICelera
Cytogenetic Map13A3.3NCBI
cM Map1314.22NCBI
Fam217a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81730,180,403 - 30,186,833 (+)NCBIGRCr8
mRatBN7.21729,975,025 - 29,981,455 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1729,966,651 - 29,981,455 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1729,799,658 - 29,806,095 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01731,403,392 - 31,409,829 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01729,795,378 - 29,801,815 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01730,670,137 - 30,676,566 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1730,670,171 - 30,676,260 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01732,570,130 - 32,576,559 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41736,301,958 - 36,312,226 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1729,545,035 - 29,551,465 (+)NCBICelera
Cytogenetic Map17p12NCBI
FAM217A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2518,695,360 - 18,714,222 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1614,698,852 - 14,717,748 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v063,901,615 - 3,912,137 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.164,091,819 - 4,102,228 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl64,091,997 - 4,110,089 (-)Ensemblpanpan1.1panPan2
FAM217A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1354,315,486 - 4,331,700 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl354,315,472 - 4,331,775 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha354,325,122 - 4,341,242 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0354,377,543 - 4,393,734 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl354,377,529 - 4,386,553 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1354,252,657 - 4,268,798 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0354,274,205 - 4,290,209 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0355,608,685 - 5,624,815 (-)NCBIUU_Cfam_GSD_1.0
Fam217a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494620,085,486 - 20,104,582 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365348,357,769 - 8,373,566 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365348,357,827 - 8,373,844 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FAM217A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11768,095,928 - 68,106,728 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1768,099,812 - 68,106,707 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660444,019,806 - 4,029,579 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Fam217a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462475621,025,160 - 21,034,902 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSCLAT00000005817   ⟹   ENSCLAP00000005716
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554659,339,744 - 9,356,358 (+)Ensembl
RefSeq Acc Id: XM_005398884   ⟹   XP_005398941
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554659,339,744 - 9,356,242 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005398885   ⟹   XP_005398942
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554659,339,744 - 9,356,242 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005398886   ⟹   XP_005398943
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554659,339,744 - 9,356,242 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005398887   ⟹   XP_005398944
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554659,338,943 - 9,356,242 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013521835   ⟹   XP_013377289
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554659,339,865 - 9,356,242 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013521836   ⟹   XP_013377290
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554659,339,744 - 9,356,242 (+)NCBI
Sequence:
RefSeq Acc Id: XP_005398944   ⟸   XM_005398887
- Peptide Label: isoform X3
- UniProtKB: A0A8C2UZU4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005398942   ⟸   XM_005398885
- Peptide Label: isoform X2
- UniProtKB: A0A8C2UZU4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005398941   ⟸   XM_005398884
- Peptide Label: isoform X1
- UniProtKB: A0A8C2UZU4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005398943   ⟸   XM_005398886
- Peptide Label: isoform X3
- UniProtKB: A0A8C2UZU4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013377290   ⟸   XM_013521836
- Peptide Label: isoform X3
- UniProtKB: A0A8C2UZU4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013377289   ⟸   XM_013521835
- Peptide Label: isoform X2
- UniProtKB: A0A8C2UZU4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000005716   ⟸   ENSCLAT00000005817


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000004051 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000005817 ENTREZGENE
  ENSCLAT00000005817.1 UniProtKB/TrEMBL
InterPro FAM217 UniProtKB/TrEMBL
NCBI Gene Fam217a ENTREZGENE
PANTHER PROTEIN FAM217A UniProtKB/TrEMBL
  PTHR22145 UniProtKB/TrEMBL
Pfam FAM217 UniProtKB/TrEMBL
UniProt A0A8C2UZU4 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-16 Fam217a  family with sequence similarity 217 member A    family with sequence similarity 217, member A  Symbol and/or name change 5135510 APPROVED