Pcbd1 (pterin-4 alpha-carbinolamine dehydratase 1) - Rat Genome Database
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Gene: Pcbd1 (pterin-4 alpha-carbinolamine dehydratase 1) Chinchilla lanigera
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Symbol: Pcbd1
Name: pterin-4 alpha-carbinolamine dehydratase 1
RGD ID: 8848104
Description: ENCODES a protein that exhibits 4-alpha-hydroxytetrahydrobiopterin dehydratase activity (ortholog); identical protein binding (ortholog); phenylalanine 4-monooxygenase activity (ortholog); INVOLVED IN L-phenylalanine metabolic process (ortholog); positive regulation of transcription, DNA-templated (ortholog); regulation of protein binding (ortholog); ASSOCIATED WITH Animal Disease Models (ortholog); Hyperphenylalaninemia with Primapterinuria (ortholog); lung adenocarcinoma (ortholog); FOUND IN cytosol (ortholog); nucleoplasm (ortholog); nucleus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: pterin-4 alpha-carbinolamine dehydratase/dimerization cofactor of hepatocyte nuclear factor 1 alpha; pterin-4-alpha-carbinolamine dehydratase
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543720,482,589 - 20,488,249 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495543720,482,589 - 20,487,337 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytosol  (ISO)
nucleoplasm  (ISO)
nucleus  (ISO)

References


Genomics

Comparative Map Data
Pcbd1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543720,482,589 - 20,488,249 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495543720,482,589 - 20,487,337 (+)NCBIChiLan1.0ChiLan1.0
PCBD1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1070,882,280 - 70,888,565 (-)EnsemblGRCh38hg38GRCh38
GRCh381070,882,280 - 70,888,565 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371072,642,037 - 72,648,541 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361072,313,273 - 72,318,547 (-)NCBINCBI36hg18NCBI36
Celera1065,925,552 - 65,930,826 (-)NCBI
Cytogenetic Map10q22.1NCBI
HuRef1066,637,269 - 66,642,544 (-)NCBIHuRef
CHM1_11072,924,821 - 72,931,328 (-)NCBICHM1_1
Pcbd1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391060,925,110 - 60,930,108 (+)NCBIGRCm39mm39
GRCm381061,089,331 - 61,094,329 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1061,089,331 - 61,094,324 (+)EnsemblGRCm38mm10GRCm38
MGSCv371060,552,091 - 60,557,077 (+)NCBIGRCm37mm9NCBIm37
MGSCv361060,484,716 - 60,489,676 (+)NCBImm8
Celera1062,189,905 - 62,194,954 (+)NCBICelera
Cytogenetic Map10B4NCBI
cM Map1032.14NCBI
Pcbd1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.02030,689,690 - 30,696,465 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2030,690,810 - 30,696,476 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02032,484,965 - 32,491,740 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42028,448,703 - 28,454,184 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.12028,462,435 - 28,467,964 (+)NCBI
Celera2030,472,263 - 30,477,776 (+)NCBICelera
Cytogenetic Map20q11NCBI
PCBD1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11069,877,545 - 69,884,030 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1069,878,773 - 69,881,174 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01067,353,903 - 67,359,073 (-)NCBIMhudiblu_PPA_v0panPan3
PCBD1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl421,719,863 - 21,721,574 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1421,719,863 - 21,723,493 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Pcbd1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049365217,843,945 - 7,847,827 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PCBD1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1473,772,835 - 73,807,281 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11473,769,339 - 73,807,278 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21479,648,886 - 79,655,375 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PCBD1
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1960,417,301 - 60,422,313 (+)NCBI
Pcbd1
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247544,893,868 - 4,898,410 (-)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000017877   ⟹   ENSCLAP00000017702
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495543720,482,589 - 20,488,249 (+)Ensembl
RefSeq Acc Id: XM_005390042   ⟹   XP_005390099
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495543720,482,589 - 20,487,337 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005390099 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005390099   ⟸   XM_005390042
- Sequence:
RefSeq Acc Id: ENSCLAP00000017702   ⟸   ENSCLAT00000017877


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000012139 Ensembl, ENTREZGENE
Ensembl Protein ENSCLAP00000017702 ENTREZGENE
Ensembl Transcript ENSCLAT00000017877 ENTREZGENE
NCBI Gene Pcbd1 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-03 Pcbd1  pterin-4 alpha-carbinolamine dehydratase 1    pterin-4 alpha-carbinolamine dehydratase/dimerization cofactor of hepatocyte nuclear factor 1 alpha  Symbol and/or name change 5135510 APPROVED