Slc26a9 (solute carrier family 26 member 9) - Rat Genome Database

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Gene: Slc26a9 (solute carrier family 26 member 9) Chinchilla lanigera
Analyze
Symbol: Slc26a9
Name: solute carrier family 26 member 9
RGD ID: 8847332
Description: ENCODES a protein that exhibits ATPase binding (ortholog); bicarbonate transmembrane transporter activity (ortholog); chloride channel activity (ortholog); INVOLVED IN bicarbonate transport (ortholog); chloride transmembrane transport (ortholog); chloride transport (ortholog); ASSOCIATED WITH autistic disorder (ortholog); cystic fibrosis (ortholog); familial adult myoclonic epilepsy 5 (ortholog); FOUND IN apical plasma membrane (ortholog); cell surface (ortholog); endoplasmic reticulum membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: solute carrier family 26 (anion exchanger), member 9
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540641,557,275 - 41,582,753 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540641,559,424 - 41,587,748 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Slc26a9
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540641,557,275 - 41,582,753 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540641,559,424 - 41,587,748 (-)NCBIChiLan1.0ChiLan1.0
SLC26A9
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381205,913,052 - 205,943,456 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1205,913,048 - 205,943,460 (-)EnsemblGRCh38hg38GRCh38
GRCh371205,882,180 - 205,912,584 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361204,148,799 - 204,179,211 (-)NCBINCBI36Build 36hg18NCBI36
Build 341202,613,832 - 202,644,245NCBI
Celera1179,018,544 - 179,048,971 (-)NCBICelera
Cytogenetic Map1q32.1NCBI
HuRef1177,045,958 - 177,075,767 (-)NCBIHuRef
CHM1_11207,305,644 - 207,336,056 (-)NCBICHM1_1
T2T-CHM13v2.01205,177,732 - 205,208,143 (-)NCBIT2T-CHM13v2.0
Slc26a9
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391131,671,760 - 131,699,242 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1131,671,760 - 131,699,242 (+)EnsemblGRCm39 Ensembl
GRCm381131,744,022 - 131,771,504 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1131,744,022 - 131,771,504 (+)EnsemblGRCm38mm10GRCm38
MGSCv371133,640,599 - 133,666,982 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361133,571,568 - 133,597,951 (+)NCBIMGSCv36mm8
Celera1134,348,529 - 134,374,882 (+)NCBICelera
Cytogenetic Map1E4NCBI
cM Map157.18NCBI
Slc26a9
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81345,730,022 - 45,757,662 (+)NCBIGRCr8
mRatBN7.21343,177,806 - 43,205,450 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1343,177,867 - 43,204,330 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1345,781,310 - 45,807,692 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01347,069,454 - 47,095,836 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01344,334,148 - 44,360,532 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01348,512,415 - 48,539,467 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1348,513,008 - 48,539,467 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01353,585,166 - 53,612,745 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41344,668,744 - 44,695,203 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11344,682,784 - 44,708,151 (+)NCBI
Celera1343,516,301 - 43,542,751 (+)NCBICelera
Cytogenetic Map13q13NCBI
SLC26A9
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2143,433,874 - 43,456,648 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1143,399,366 - 43,422,182 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01181,521,826 - 181,544,564 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11185,805,689 - 185,836,074 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1185,807,517 - 185,828,444 (-)Ensemblpanpan1.1panPan2
SLC26A9
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1382,267,404 - 2,303,997 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl382,276,065 - 2,304,066 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha382,367,878 - 2,396,646 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0382,272,424 - 2,301,195 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl382,273,256 - 2,293,217 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1382,266,507 - 2,295,256 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0382,658,174 - 2,686,946 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0382,859,093 - 2,887,881 (-)NCBIUU_Cfam_GSD_1.0
Slc26a9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934469,321,775 - 69,350,275 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365576,562,109 - 6,588,502 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365576,562,125 - 6,588,200 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC26A9
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl966,558,811 - 66,593,337 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1966,557,560 - 66,593,322 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
SLC26A9
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12523,406,997 - 23,432,003 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2523,408,157 - 23,429,198 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605524,098,007 - 24,128,381 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slc26a9
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248075,366,820 - 5,386,150 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248075,364,708 - 5,385,832 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000017985   ⟹   ENSCLAP00000017808
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495540641,557,275 - 41,582,753 (-)Ensembl
RefSeq Acc Id: XM_013523019   ⟹   XP_013378473
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540641,559,424 - 41,582,753 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013523023   ⟹   XP_013378477
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540641,559,424 - 41,582,753 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013523029   ⟹   XP_013378483
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540641,559,424 - 41,587,748 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013378473 (Get FASTA)   NCBI Sequence Viewer  
  XP_013378477 (Get FASTA)   NCBI Sequence Viewer  
  XP_013378483 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000017808
  ENSCLAP00000017808.1
Reference Protein Sequences
RefSeq Acc Id: XP_013378483   ⟸   XM_013523029
- Peptide Label: isoform X3
- UniProtKB: A0A8C2VSS5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013378477   ⟸   XM_013523023
- Peptide Label: isoform X2
- UniProtKB: A0A8C2VSS5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013378473   ⟸   XM_013523019
- Peptide Label: isoform X1
- UniProtKB: A0A8C2VSS5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000017808   ⟸   ENSCLAT00000017985
Protein Domains
STAS


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000012220 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000017985 ENTREZGENE
  ENSCLAT00000017985.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.750.24 UniProtKB/TrEMBL
InterPro SLC26A/SulP_dom UniProtKB/TrEMBL
  SLC26A/SulP_fam UniProtKB/TrEMBL
  STAS_dom UniProtKB/TrEMBL
  STAS_dom_sf UniProtKB/TrEMBL
NCBI Gene Slc26a9 ENTREZGENE
PANTHER PTHR11814 UniProtKB/TrEMBL
  PTHR11814:SF17 UniProtKB/TrEMBL
Pfam STAS UniProtKB/TrEMBL
  Sulfate_transp UniProtKB/TrEMBL
PROSITE STAS UniProtKB/TrEMBL
Superfamily-SCOP SSF52091 UniProtKB/TrEMBL
UniProt A0A8C2VSS5 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-03 Slc26a9  solute carrier family 26 member 9    solute carrier family 26 (anion exchanger), member 9  Symbol and/or name change 5135510 APPROVED