Cd79b (CD79b molecule) - Rat Genome Database

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Pathways
Gene: Cd79b (CD79b molecule) Chinchilla lanigera
Analyze
Symbol: Cd79b
Name: CD79b molecule
RGD ID: 8845836
Description: ENCODES a protein that exhibits identical protein binding (ortholog); transmembrane signaling receptor activity (ortholog); INVOLVED IN B cell receptor signaling pathway (ortholog); response to bacterium (ortholog); ASSOCIATED WITH acute lymphoblastic leukemia (ortholog); agammaglobulinemia (ortholog); agammaglobulinemia 6 (ortholog); FOUND IN B cell receptor complex (ortholog); external side of plasma membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: B-cell antigen receptor complex-associated protein beta chain; CD79b molecule, immunoglobulin-associated beta
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554787,909,153 - 7,913,166 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554787,909,353 - 7,912,814 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline

Genomics

Comparative Map Data
Cd79b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554787,909,153 - 7,913,166 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554787,909,353 - 7,912,814 (+)NCBIChiLan1.0ChiLan1.0
CD79B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381763,928,740 - 63,932,331 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1763,928,738 - 63,932,336 (-)EnsemblGRCh38hg38GRCh38
GRCh371762,006,100 - 62,009,691 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361759,359,830 - 59,363,436 (-)NCBINCBI36Build 36hg18NCBI36
Build 341759,359,831 - 59,363,446NCBI
Celera1756,394,160 - 56,397,766 (-)NCBICelera
Cytogenetic Map17q23.3NCBI
HuRef1757,373,817 - 57,377,419 (-)NCBIHuRef
CHM1_11762,070,017 - 62,073,623 (-)NCBICHM1_1
T2T-CHM13v2.01764,799,505 - 64,803,094 (-)NCBIT2T-CHM13v2.0
Cd79b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911106,202,167 - 106,205,388 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl11106,202,167 - 106,205,588 (-)EnsemblGRCm39 Ensembl
GRCm3811106,311,341 - 106,314,562 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11106,311,341 - 106,314,762 (-)EnsemblGRCm38mm10GRCm38
MGSCv3711106,172,655 - 106,175,843 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3611106,127,431 - 106,130,760 (-)NCBIMGSCv36mm8
Celera11118,042,026 - 118,045,214 (-)NCBICelera
Cytogenetic Map11E1NCBI
cM Map1168.89NCBI
Cd79b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21091,239,354 - 91,242,500 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1091,239,356 - 91,242,625 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1096,293,979 - 96,297,125 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01095,757,144 - 95,760,290 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01091,167,742 - 91,170,888 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01094,497,445 - 94,500,591 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1094,497,448 - 94,500,591 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01094,248,655 - 94,251,801 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41095,703,129 - 95,706,275 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11095,717,499 - 95,720,645 (-)NCBI
Celera1089,914,837 - 89,917,983 (-)NCBICelera
Cytogenetic Map10q32.1NCBI
CD79B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan11784,931,947 - 84,935,931 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01758,022,375 - 58,026,359 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11763,116,722 - 63,120,335 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1763,116,722 - 63,120,335 (-)Ensemblpanpan1.1panPan2
CD79B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1911,834,230 - 11,844,946 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl911,842,190 - 11,844,843 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha912,801,263 - 12,804,585 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0913,502,931 - 13,506,253 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl913,502,935 - 13,506,208 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1912,449,684 - 12,453,001 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0915,079,310 - 15,082,632 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0915,081,786 - 15,085,109 (+)NCBIUU_Cfam_GSD_1.0
Cd79b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560214,657,115 - 14,660,367 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365414,534,246 - 4,537,590 (-)EnsemblSpeTri2.0
SpeTri2.0NW_0049365414,534,233 - 4,537,448 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CD79B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1215,053,007 - 15,056,438 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11215,052,966 - 15,056,441 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21215,044,369 - 15,047,831 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CD79B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11657,339,492 - 57,343,085 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1657,339,457 - 57,343,358 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607727,952,012 - 27,955,604 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cd79b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248491,429,912 - 1,432,955 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248491,429,446 - 1,432,835 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSCLAT00000012327   ⟹   ENSCLAP00000012185
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554787,909,153 - 7,913,166 (+)Ensembl
RefSeq Acc Id: XM_005402178   ⟹   XP_005402235
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554787,909,353 - 7,912,814 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005402179   ⟹   XP_005402236
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554787,909,514 - 7,912,814 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005402235 (Get FASTA)   NCBI Sequence Viewer  
  XP_005402236 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_005402235   ⟸   XM_005402178
- Peptide Label: isoform X1
- UniProtKB: A0A8C2VD09 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005402236   ⟸   XM_005402179
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSCLAP00000012185   ⟸   ENSCLAT00000012327
Protein Domains
Ig-like


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000008401 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSCLAP00000012185 ENTREZGENE
  ENSCLAP00000012185.1 UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000012327 ENTREZGENE
  ENSCLAT00000012327.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/TrEMBL
InterPro CD79a/CD79b UniProtKB/TrEMBL
  Ig-like_dom UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  Ig_I-set UniProtKB/TrEMBL
  Ig_sub UniProtKB/TrEMBL
  Phos_immunorcpt_sig_ITAM UniProtKB/TrEMBL
NCBI Gene Cd79b ENTREZGENE
PANTHER B-CELL ANTIGEN RECEPTOR COMPLEX-ASSOCIATED PROTEIN BETA CHAIN UniProtKB/TrEMBL
  PTHR14334 UniProtKB/TrEMBL
Pfam I-set UniProtKB/TrEMBL
PROSITE IG_LIKE UniProtKB/TrEMBL
SMART ITAM UniProtKB/TrEMBL
  SM00409 UniProtKB/TrEMBL
Superfamily-SCOP SSF48726 UniProtKB/TrEMBL
UniProt A0A8C2VD09 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-16 Cd79b  CD79b molecule    CD79b molecule, immunoglobulin-associated beta  Symbol and/or name change 5135510 APPROVED