Chst4 (carbohydrate sulfotransferase 4) - Rat Genome Database

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Gene: Chst4 (carbohydrate sulfotransferase 4) Chinchilla lanigera
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Symbol: Chst4
Name: carbohydrate sulfotransferase 4
RGD ID: 8845654
Description: ENCODES a protein that exhibits N-acetylglucosamine 6-O-sulfotransferase activity (ortholog); INVOLVED IN leukocyte tethering or rolling (ortholog); N-acetylglucosamine metabolic process (ortholog); positive regulation of leukocyte tethering or rolling (ortholog); ASSOCIATED WITH autosomal dominant dyskeratosis congenita 6 (ortholog); FOUND IN trans-Golgi network (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 4
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554844,243,148 - 4,244,293 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554844,234,677 - 4,245,092 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISS annotations to Chinchilla, Squirrel, Bonobo and/or Dog genes from Human gene annotations

Genomics

Comparative Map Data
Chst4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554844,243,148 - 4,244,293 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554844,234,677 - 4,245,092 (+)NCBIChiLan1.0ChiLan1.0
CHST4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381671,526,120 - 71,538,748 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl1671,525,233 - 71,538,748 (+)EnsemblGRCh38hg38GRCh38
GRCh371671,560,023 - 71,572,651 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361670,117,560 - 70,129,917 (+)NCBINCBI36hg18NCBI36
Build 341670,117,561 - 70,129,917NCBI
Celera1655,875,874 - 55,888,343 (+)NCBI
Cytogenetic Map16q22.2NCBI
HuRef1657,328,061 - 57,340,472 (+)NCBIHuRef
CHM1_11672,972,864 - 72,985,312 (+)NCBICHM1_1
T2T-CHM13v2.01677,343,320 - 77,355,947 (+)NCBI
Chst4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm398110,755,707 - 110,766,033 (-)NCBIGRCm39mm39
GRCm39 Ensembl8110,755,785 - 110,766,372 (-)Ensembl
GRCm388110,029,075 - 110,039,401 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl8110,029,153 - 110,039,740 (-)EnsemblGRCm38mm10GRCm38
MGSCv378112,552,975 - 112,563,234 (-)NCBIGRCm37mm9NCBIm37
MGSCv368112,918,282 - 112,928,869 (-)NCBImm8
Celera8114,251,169 - 114,261,515 (-)NCBICelera
Cytogenetic Map8D3NCBI
Chst4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21937,993,471 - 38,002,123 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl1937,991,417 - 38,003,608 (-)Ensembl
Rnor_6.01941,630,060 - 41,642,373 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1941,631,715 - 41,640,367 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01952,453,925 - 52,465,993 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41939,900,812 - 39,909,464 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11939,906,652 - 39,907,819 (-)NCBI
Celera1937,396,998 - 37,405,591 (-)NCBICelera
Cytogenetic Map19q12NCBI
CHST4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11671,363,206 - 71,375,615 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1671,373,703 - 71,374,863 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01653,472,432 - 53,485,605 (-)NCBIMhudiblu_PPA_v0panPan3
CHST4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1577,322,779 - 77,341,017 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl577,331,342 - 77,340,057 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha577,292,995 - 77,301,710 (+)NCBI
ROS_Cfam_1.0577,761,886 - 77,789,503 (+)NCBI
ROS_Cfam_1.0 Ensembl577,770,434 - 77,779,148 (+)Ensembl
UMICH_Zoey_3.1577,590,532 - 77,599,275 (+)NCBI
UNSW_CanFamBas_1.0577,413,685 - 77,422,400 (+)NCBI
UU_Cfam_GSD_1.0577,912,392 - 77,921,119 (+)NCBI
Chst4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934937,360,087 - 37,362,145 (+)NCBI
SpeTri2.0NW_00493647522,227,702 - 22,229,022 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CHST4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl614,535,849 - 14,546,972 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1614,532,379 - 14,544,502 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2614,173,077 - 14,181,166 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CHST4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1554,650,418 - 54,663,195 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl554,661,280 - 54,662,446 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604717,469,725 - 17,471,726 (+)NCBIVero_WHO_p1.0
Chst4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474613,738,110 - 13,739,261 (+)EnsemblHetGla_female_1.0hetGla2
HetGla 1.0NW_00462474613,728,973 - 13,740,231 (+)NCBIHetGla_female_1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000025843   ⟹   ENSCLAP00000025572
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554844,243,148 - 4,244,293 (+)Ensembl
RefSeq Acc Id: XM_005403503   ⟹   XP_005403560
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554844,235,690 - 4,245,092 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005403504   ⟹   XP_005403561
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554844,235,428 - 4,245,092 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005403507   ⟹   XP_005403564
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554844,235,427 - 4,245,092 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013503843   ⟹   XP_013359297
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554844,238,317 - 4,245,092 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013503844   ⟹   XP_013359298
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554844,235,427 - 4,245,092 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013503845   ⟹   XP_013359299
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554844,234,677 - 4,245,092 (+)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: XP_005403561   ⟸   XM_005403504
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_005403564   ⟸   XM_005403507
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_005403560   ⟸   XM_005403503
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_013359299   ⟸   XM_013503845
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_013359298   ⟸   XM_013503844
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_013359297   ⟸   XM_013503843
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSCLAP00000025572   ⟸   ENSCLAT00000025843
Protein Domains
Sulfotransfer_1


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000017669 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSCLAP00000025572 ENTREZGENE
  ENSCLAP00000025572.1 UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000025843 ENTREZGENE
  ENSCLAT00000025843.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.300 UniProtKB/TrEMBL
InterPro Carbohydrate_sulfotransferase UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
  Sulfotransferase_dom UniProtKB/TrEMBL
NCBI Gene Chst4 ENTREZGENE
Pfam Sulfotransfer_1 UniProtKB/TrEMBL
PIRSF Carbohydrate_sulfotransferase UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/TrEMBL
UniProt A0A8C2WAQ2_CHILA UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-03 Chst4  carbohydrate sulfotransferase 4    carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 4  Symbol and/or name change 5135510 APPROVED