Rplp2 (ribosomal protein lateral stalk subunit P2) - Rat Genome Database

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Gene: Rplp2 (ribosomal protein lateral stalk subunit P2) Chinchilla lanigera
Analyze
Symbol: Rplp2
Name: ribosomal protein lateral stalk subunit P2
RGD ID: 8844787
Description: ENCODES a protein that exhibits iron ion binding (ortholog); ribonucleoprotein complex binding (ortholog); structural constituent of ribosome (ortholog); INVOLVED IN cellular response to cAMP (ortholog); cellular response to Thyroid stimulating hormone (ortholog); positive regulation of translation (ortholog); PARTICIPATES IN ribosome biogenesis pathway; translation pathway; ASSOCIATED WITH Breast Neoplasms (ortholog); Chanarin-Dorfman syndrome (ortholog); delta beta-thalassemia (ortholog); FOUND IN cytoplasm (ortholog); cytosolic large ribosomal subunit (ortholog); synapse (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: 60S acidic ribosomal protein P2; ribosomal protein, large, P2
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495547611,312,051 - 11,314,334 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Rplp2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495547611,312,051 - 11,314,334 (-)NCBIChiLan1.0ChiLan1.0
RPLP2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3811809,967 - 812,876 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl11809,965 - 812,880 (+)EnsemblGRCh38hg38GRCh38
GRCh3711809,967 - 812,876 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3611799,936 - 802,876 (+)NCBINCBI36Build 36hg18NCBI36
Build 3411799,964 - 802,876NCBI
Celera11876,486 - 879,425 (+)NCBICelera
Cytogenetic Map11p15.5NCBI
HuRef11625,764 - 628,703 (+)NCBIHuRef
CHM1_111808,843 - 811,774 (+)NCBICHM1_1
T2T-CHM13v2.011861,401 - 864,310 (+)NCBIT2T-CHM13v2.0
Rplp2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397141,027,564 - 141,031,272 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7141,027,283 - 141,031,498 (+)EnsemblGRCm39 Ensembl
GRCm387141,447,651 - 141,451,359 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7141,447,370 - 141,451,585 (+)EnsemblGRCm38mm10GRCm38
MGSCv377148,633,549 - 148,637,241 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv367141,298,988 - 141,302,664 (+)NCBIMGSCv36mm8
Celera7141,241,396 - 141,245,088 (+)NCBICelera
Cytogenetic Map7F5NCBI
cM Map786.8NCBI
Rplp2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81205,975,598 - 205,978,192 (+)NCBIGRCr8
mRatBN7.21196,546,086 - 196,548,636 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1196,546,352 - 196,548,645 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1204,891,727 - 204,893,992 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01212,020,228 - 212,022,504 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01204,694,366 - 204,696,642 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01214,428,280 - 214,430,551 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1214,428,526 - 214,430,515 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl1213,991,620 - 213,993,609 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01220,908,603 - 220,910,874 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41201,635,581 - 201,637,852 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1194,179,859 - 194,182,130 (+)NCBICelera
Cytogenetic Map1q41NCBI
RPLP2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v293,207,599 - 3,210,630 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1112,417,610 - 2,420,578 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v011827,500 - 830,490 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.111870,232 - 874,253 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl11870,709 - 874,253 (+)Ensemblpanpan1.1panPan2
RPLP2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11845,176,539 - 45,178,270 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1843,843,647 - 43,845,412 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01845,841,605 - 45,843,370 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.11845,306,368 - 45,308,128 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01844,871,209 - 44,872,975 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01845,609,324 - 45,611,096 (+)NCBIUU_Cfam_GSD_1.0
Rplp2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947574,783 - 577,567 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936888574,583 - 577,640 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936888574,896 - 577,567 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RPLP2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl2507,848 - 510,782 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.12507,891 - 509,818 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.22164,530 - 166,527 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RPLP2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11617,401 - 620,656 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1612,490 - 620,805 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603897,706,697 - 97,710,533 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rplp2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476621,698,821 - 21,701,310 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476621,698,821 - 21,701,248 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_005401811   ⟹   XP_005401868
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495547611,312,051 - 11,314,334 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005401868 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000003512
  ENSCLAP00000003512.1
Reference Protein Sequences
RefSeq Acc Id: XP_005401868   ⟸   XM_005401811
- UniProtKB: A0A8C2UNJ2 (UniProtKB/TrEMBL)
- Sequence:


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000002508 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000003586 ENTREZGENE
  ENSCLAT00000003586.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.10.1410 UniProtKB/TrEMBL
InterPro P1/P2_N_sf UniProtKB/TrEMBL
  Ribosomal_L12/P1/P2 UniProtKB/TrEMBL
  Ribosomal_P2 UniProtKB/TrEMBL
NCBI Gene Rplp2 ENTREZGENE
PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P2 UniProtKB/TrEMBL
  PTHR21141 UniProtKB/TrEMBL
Pfam Ribosomal_60s UniProtKB/TrEMBL
UniProt A0A8C2UNJ2 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-03 Rplp2  ribosomal protein lateral stalk subunit P2    ribosomal protein, large, P2  Symbol and/or name change 5135510 APPROVED