Ppfia2 (PTPRF interacting protein alpha 2) - Rat Genome Database

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Gene: Ppfia2 (PTPRF interacting protein alpha 2) Chinchilla lanigera
Analyze
Symbol: Ppfia2
Name: PTPRF interacting protein alpha 2
RGD ID: 8844354
Description: ENCODES a protein that exhibits protein-containing complex binding (ortholog); structural constituent of postsynaptic density (ortholog); structural constituent of presynapse (ortholog); INVOLVED IN dense core granule cytoskeletal transport (ortholog); regulation of dendritic spine development (ortholog); regulation of dendritic spine morphogenesis (ortholog); FOUND IN dendritic spine (ortholog); glutamatergic synapse (ortholog); postsynaptic density (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: liprin-alpha-2
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540519,839,092 - 20,286,578 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540519,837,749 - 20,291,666 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Ppfia2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540519,839,092 - 20,286,578 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540519,837,749 - 20,291,666 (-)NCBIChiLan1.0ChiLan1.0
PPFIA2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381281,257,975 - 81,759,350 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1281,257,975 - 81,759,553 (-)EnsemblGRCh38hg38GRCh38
GRCh371281,651,754 - 82,153,129 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361280,177,487 - 80,677,240 (-)NCBINCBI36Build 36hg18NCBI36
Build 341280,155,823 - 80,655,577NCBI
Celera1281,321,211 - 81,820,889 (-)NCBICelera
Cytogenetic Map12q21.31NCBI
HuRef1278,708,811 - 79,209,133 (-)NCBIHuRef
CHM1_11281,618,521 - 82,119,470 (-)NCBICHM1_1
T2T-CHM13v2.01281,236,956 - 81,738,412 (-)NCBIT2T-CHM13v2.0
Ppfia2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3910106,305,129 - 106,769,329 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl10106,306,200 - 106,771,813 (+)EnsemblGRCm39 Ensembl
GRCm3810106,469,500 - 106,933,468 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl10106,470,339 - 106,935,952 (+)EnsemblGRCm38mm10GRCm38
MGSCv3710105,907,395 - 106,369,574 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3610105,874,449 - 106,336,628 (+)NCBIMGSCv36mm8
Celera10108,413,090 - 108,874,050 (+)NCBICelera
Cytogenetic Map10D1NCBI
cM Map1055.39NCBI
Ppfia2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8743,652,258 - 44,126,555 (+)NCBIGRCr8
mRatBN7.2741,765,716 - 42,240,104 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl741,765,575 - 42,239,599 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx743,671,707 - 44,144,439 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0745,874,782 - 46,347,515 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0745,652,995 - 46,125,395 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0748,548,932 - 49,045,852 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl748,867,664 - 49,042,455 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0748,563,521 - 48,568,045 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.0748,658,858 - 49,058,116 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4745,140,154 - 45,616,620 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1745,160,426 - 45,636,728 (+)NCBI
Celera738,644,350 - 39,116,317 (+)NCBICelera
Cytogenetic Map7q21NCBI
PPFIA2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21089,297,594 - 89,800,504 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11289,293,993 - 89,796,899 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01278,768,756 - 79,271,630 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11281,879,812 - 82,381,524 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1281,879,812 - 82,376,917 (-)Ensemblpanpan1.1panPan2
PPFIA2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11523,481,370 - 23,950,412 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1523,482,549 - 23,951,141 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1523,904,766 - 24,373,671 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01523,842,759 - 24,321,109 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1523,842,772 - 24,320,345 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11523,428,189 - 23,897,907 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01523,479,044 - 23,947,917 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01523,719,822 - 24,188,937 (-)NCBIUU_Cfam_GSD_1.0
Ppfia2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494536,381,131 - 36,821,732 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366982,094,374 - 2,531,465 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366982,090,768 - 2,531,366 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PPFIA2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl599,819,430 - 100,279,030 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1599,818,591 - 100,279,029 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.25105,054,270 - 105,195,571 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PPFIA2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11176,740,204 - 77,237,990 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1176,736,719 - 77,079,140 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037168,176,151 - 168,685,075 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ppfia2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624837629,302 - 1,111,081 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624837627,484 - 1,116,597 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005374377 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005374388 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013517986 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013517988 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013517990 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013517995 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013518004 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013518006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013518011 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013518014 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013518017 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013518024 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013518025 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AGCD01005047 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01005048 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01005049 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01005050 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01005051 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01005052 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01005053 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01005054 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GBCE01046938 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSCLAT00000011917   ⟹   ENSCLAP00000011779
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495540519,839,092 - 20,157,765 (-)Ensembl
Ensembl Acc Id: ENSCLAT00000011918   ⟹   ENSCLAP00000011780
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495540519,839,092 - 20,157,765 (-)Ensembl
Ensembl Acc Id: ENSCLAT00000011919   ⟹   ENSCLAP00000011781
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495540519,841,110 - 20,157,765 (-)Ensembl
Ensembl Acc Id: ENSCLAT00000011920   ⟹   ENSCLAP00000011782
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495540519,841,143 - 20,286,578 (-)Ensembl
RefSeq Acc Id: XM_005374377   ⟹   XP_005374434
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540519,837,749 - 20,291,666 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005374388   ⟹   XP_005374445
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540519,837,749 - 20,157,368 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013517986   ⟹   XP_013373440
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540519,837,749 - 20,291,666 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013517988   ⟹   XP_013373442
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540519,837,749 - 20,286,578 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013517990   ⟹   XP_013373444
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540519,837,749 - 20,286,578 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013517995   ⟹   XP_013373449
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540519,837,749 - 20,291,090 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013518004   ⟹   XP_013373458
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540519,837,749 - 20,291,090 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013518006   ⟹   XP_013373460
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540519,837,749 - 20,286,578 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013518011   ⟹   XP_013373465
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540519,839,092 - 20,286,578 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013518014   ⟹   XP_013373468
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540519,837,749 - 20,157,686 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013518017   ⟹   XP_013373471
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540519,837,749 - 20,157,686 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013518024   ⟹   XP_013373478
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540519,837,749 - 20,157,686 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013518025   ⟹   XP_013373479
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540519,837,749 - 20,157,686 (-)NCBI
Sequence:
RefSeq Acc Id: XP_005374434   ⟸   XM_005374377
- Peptide Label: isoform X1
- UniProtKB: A0A8C2V8D3 (UniProtKB/TrEMBL),   A0A8C2VDG6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005374445   ⟸   XM_005374388
- Peptide Label: isoform X9
- UniProtKB: A0A8C2VDG6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013373440   ⟸   XM_013517986
- Peptide Label: isoform X1
- UniProtKB: A0A8C2V8D3 (UniProtKB/TrEMBL),   A0A8C2VDG6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013373458   ⟸   XM_013518004
- Peptide Label: isoform X5
- UniProtKB: A0A8C2VDG6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013373449   ⟸   XM_013517995
- Peptide Label: isoform X4
- UniProtKB: A0A8C2VDG6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013373460   ⟸   XM_013518006
- Peptide Label: isoform X6
- UniProtKB: A0A8C2VDG6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013373442   ⟸   XM_013517988
- Peptide Label: isoform X2
- UniProtKB: A0A8C2VDG6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013373444   ⟸   XM_013517990
- Peptide Label: isoform X3
- UniProtKB: A0A8C2VDG6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013373478   ⟸   XM_013518024
- Peptide Label: isoform X10
- UniProtKB: A0A8C2VDG6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013373471   ⟸   XM_013518017
- Peptide Label: isoform X8
- UniProtKB: A0A8C2VDG6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013373479   ⟸   XM_013518025
- Peptide Label: isoform X11
- UniProtKB: A0A8C2VDG6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013373468   ⟸   XM_013518014
- Peptide Label: isoform X8
- UniProtKB: A0A8C2VDG6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013373465   ⟸   XM_013518011
- Peptide Label: isoform X7
- UniProtKB: A0A8C2VDG6 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSCLAP00000011781   ⟸   ENSCLAT00000011919
Ensembl Acc Id: ENSCLAP00000011780   ⟸   ENSCLAT00000011918
Ensembl Acc Id: ENSCLAP00000011779   ⟸   ENSCLAT00000011917
Ensembl Acc Id: ENSCLAP00000011782   ⟸   ENSCLAT00000011920
Protein Domains
SAM


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000008120 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000011917.1 UniProtKB/TrEMBL
  ENSCLAT00000011918.1 UniProtKB/TrEMBL
  ENSCLAT00000011919 ENTREZGENE
  ENSCLAT00000011919.1 UniProtKB/TrEMBL
  ENSCLAT00000011920 ENTREZGENE
  ENSCLAT00000011920.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.150.50 UniProtKB/TrEMBL
InterPro Liprin UniProtKB/TrEMBL
  Liprin-alpha_SAM_rpt_1 UniProtKB/TrEMBL
  Liprin-alpha_SAM_rpt_2 UniProtKB/TrEMBL
  Liprin-alpha_SAM_rpt_3 UniProtKB/TrEMBL
  SAM UniProtKB/TrEMBL
  SAM/pointed_sf UniProtKB/TrEMBL
NCBI Gene Ppfia2 ENTREZGENE
PANTHER PTHR12587 UniProtKB/TrEMBL
  PTHR12587:SF6 UniProtKB/TrEMBL
Pfam SAM_1 UniProtKB/TrEMBL
  SAM_2 UniProtKB/TrEMBL
PROSITE SAM_DOMAIN UniProtKB/TrEMBL
SMART SAM UniProtKB/TrEMBL
Superfamily-SCOP SSF47769 UniProtKB/TrEMBL
  Tropomyosin UniProtKB/TrEMBL
UniProt A0A8C2V8D3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C2V8D4_CHILA UniProtKB/TrEMBL
  A0A8C2VAK2_CHILA UniProtKB/TrEMBL
  A0A8C2VDG6 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-03 Ppfia2  PTPRF interacting protein alpha 2    protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2  Symbol and/or name change 5135510 APPROVED