Ankrd28 (ankyrin repeat domain 28) - Rat Genome Database

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Gene: Ankrd28 (ankyrin repeat domain 28) Chinchilla lanigera
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Symbol: Ankrd28
Name: ankyrin repeat domain 28
RGD ID: 8843524
Description: ASSOCIATED WITH 3p deletion syndrome (ortholog); genetic disease (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit A
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554308,014,583 - 8,197,434 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554308,014,631 - 8,197,434 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Ankrd28
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554308,014,583 - 8,197,434 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554308,014,631 - 8,197,434 (-)NCBIChiLan1.0ChiLan1.0
ANKRD28
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38315,667,236 - 15,859,814 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl315,667,236 - 15,859,771 (-)EnsemblGRCh38hg38GRCh38
GRCh37315,708,743 - 15,901,321 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36315,683,747 - 15,876,057 (-)NCBINCBI36Build 36hg18NCBI36
Build 34315,700,252 - 15,813,337NCBI
Celera315,646,877 - 15,840,010 (-)NCBICelera
Cytogenetic Map3p25.1NCBI
HuRef315,643,973 - 15,836,592 (-)NCBIHuRef
CHM1_1315,659,447 - 15,852,157 (-)NCBICHM1_1
T2T-CHM13v2.0315,669,546 - 15,862,982 (-)NCBIT2T-CHM13v2.0
Ankrd28
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391431,418,687 - 31,552,374 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1431,420,725 - 31,552,608 (-)EnsemblGRCm39 Ensembl
GRCm381431,698,768 - 31,830,567 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1431,698,768 - 31,830,651 (-)EnsemblGRCm38mm10GRCm38
MGSCv371432,513,201 - 32,643,601 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361430,529,024 - 30,659,424 (-)NCBIMGSCv36mm8
Celera1427,958,335 - 28,088,802 (-)NCBICelera
Cytogenetic Map14BNCBI
cM Map1419.4NCBI
Ankrd28
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8166,924,868 - 7,056,593 (-)NCBIGRCr8
mRatBN7.2166,918,487 - 7,050,244 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl166,914,336 - 7,050,249 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0167,816,876 - 7,879,023 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl167,818,667 - 7,928,518 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0167,737,522 - 7,800,288 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4167,166,559 - 7,248,739 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera168,148,113 - 8,278,476 (+)NCBICelera
Cytogenetic Map16p16NCBI
ANKRD28
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2215,651,816 - 15,845,914 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1315,656,580 - 15,850,704 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0315,591,890 - 15,785,997 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1315,928,978 - 16,122,608 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl315,932,020 - 16,057,647 (-)Ensemblpanpan1.1panPan2
ANKRD28
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12326,824,219 - 27,012,601 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2326,823,479 - 27,010,908 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2326,799,385 - 26,988,667 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02327,326,011 - 27,516,914 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2327,326,086 - 27,515,793 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12327,108,061 - 27,216,255 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02327,088,868 - 27,278,144 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02327,337,409 - 27,526,786 (+)NCBIUU_Cfam_GSD_1.0
Ankrd28
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118175,412,381 - 175,592,059 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364738,550,950 - 8,730,902 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364738,550,851 - 8,730,845 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ANKRD28
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl132,922,853 - 3,135,709 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1132,922,855 - 3,135,743 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2133,071,720 - 3,208,254 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ANKRD28
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11560,492,121 - 60,681,487 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1560,491,029 - 60,617,911 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604133,532,424 - 33,721,901 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ankrd28
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624821965,854 - 1,155,128 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624821964,162 - 1,155,437 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSCLAT00000012168   ⟹   ENSCLAP00000012027
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554308,014,583 - 8,197,434 (-)Ensembl
RefSeq Acc Id: ENSCLAT00000012169   ⟹   ENSCLAP00000012028
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554308,017,466 - 8,126,494 (-)Ensembl
RefSeq Acc Id: ENSCLAT00000012170   ⟹   ENSCLAP00000012029
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554308,017,635 - 8,125,442 (-)Ensembl
RefSeq Acc Id: XM_005387446   ⟹   XP_005387503
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554308,014,631 - 8,127,915 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005387448   ⟹   XP_005387505
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554308,014,631 - 8,128,027 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013515633   ⟹   XP_013371087
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554308,014,631 - 8,197,434 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013515634   ⟹   XP_013371088
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554308,014,631 - 8,197,412 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013515635   ⟹   XP_013371089
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554308,014,631 - 8,126,466 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013515636   ⟹   XP_013371090
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554308,014,631 - 8,197,417 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013515637   ⟹   XP_013371091
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554308,014,631 - 8,128,111 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013515638   ⟹   XP_013371092
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554308,014,631 - 8,125,298 (-)NCBI
Sequence:
RefSeq Acc Id: XP_005387505   ⟸   XM_005387448
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_005387503   ⟸   XM_005387446
- Peptide Label: isoform X1
- UniProtKB: A0A8C2VAE4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013371087   ⟸   XM_013515633
- Peptide Label: isoform X2
- UniProtKB: A0A8C2VFQ1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013371090   ⟸   XM_013515636
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_013371088   ⟸   XM_013515634
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_013371091   ⟸   XM_013515637
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_013371089   ⟸   XM_013515635
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_013371092   ⟸   XM_013515638
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: ENSCLAP00000012028   ⟸   ENSCLAT00000012169
RefSeq Acc Id: ENSCLAP00000012027   ⟸   ENSCLAT00000012168
RefSeq Acc Id: ENSCLAP00000012029   ⟸   ENSCLAT00000012170


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000008300 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000012168 ENTREZGENE
  ENSCLAT00000012168.1 UniProtKB/TrEMBL
  ENSCLAT00000012169 ENTREZGENE
  ENSCLAT00000012169.1 UniProtKB/TrEMBL
  ENSCLAT00000012170.1 UniProtKB/TrEMBL
Gene3D-CATH 1.25.40.20 UniProtKB/TrEMBL
InterPro Ankyrin_rpt UniProtKB/TrEMBL
  Ankyrin_rpt-contain_sf UniProtKB/TrEMBL
NCBI Gene Ankrd28 ENTREZGENE
PANTHER ANK_REP_REGION DOMAIN-CONTAINING PROTEIN UniProtKB/TrEMBL
  ANKYRIN 2 UniProtKB/TrEMBL
  MOLTING PROTEIN MLT-4 UniProtKB/TrEMBL
  ROLLING PEBBLES, ISOFORM B UniProtKB/TrEMBL
Pfam Ank UniProtKB/TrEMBL
  Ank_2 UniProtKB/TrEMBL
  Ank_4 UniProtKB/TrEMBL
PRINTS ANKYRIN UniProtKB/TrEMBL
PROSITE ANK_REP_REGION UniProtKB/TrEMBL
  ANK_REPEAT UniProtKB/TrEMBL
SMART ANK UniProtKB/TrEMBL
Superfamily-SCOP SSF48403 UniProtKB/TrEMBL
UniProt A0A8C2VAE4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C2VCL9_CHILA UniProtKB/TrEMBL
  A0A8C2VFQ1 ENTREZGENE, UniProtKB/TrEMBL