Lypd1 (LY6/PLAUR domain containing 1) - Rat Genome Database

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Gene: Lypd1 (LY6/PLAUR domain containing 1) Chinchilla lanigera
Analyze
Symbol: Lypd1
Name: LY6/PLAUR domain containing 1
RGD ID: 8841195
Description: ENCODES a protein that exhibits acetylcholine receptor binding (ortholog); acetylcholine receptor inhibitor activity (ortholog); INVOLVED IN acetylcholine receptor signaling pathway (ortholog); behavioral fear response (ortholog); negative regulation of protein localization to plasma membrane (ortholog); ASSOCIATED WITH genetic disease (ortholog); FOUND IN membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ly6/PLAUR domain-containing protein 1
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955440236,012 - 266,028 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955440236,012 - 266,028 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
membrane  (ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Lypd1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955440236,012 - 266,028 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955440236,012 - 266,028 (-)NCBIChiLan1.0ChiLan1.0
LYPD1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382132,643,286 - 132,671,526 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2132,643,286 - 132,671,579 (-)EnsemblGRCh38hg38GRCh38
GRCh372133,400,859 - 133,429,099 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362133,118,807 - 133,145,540 (-)NCBINCBI36Build 36hg18NCBI36
Build 342133,236,157 - 133,261,510NCBI
Celera2127,117,594 - 127,144,318 (-)NCBICelera
Cytogenetic Map2q21.2NCBI
HuRef2125,395,959 - 125,422,502 (-)NCBIHuRef
CHM1_12133,407,570 - 133,434,311 (-)NCBICHM1_1
T2T-CHM13v2.02133,081,646 - 133,109,877 (-)NCBIT2T-CHM13v2.0
Lypd1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391125,795,359 - 125,841,134 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1125,795,359 - 125,840,838 (-)EnsemblGRCm39 Ensembl
GRCm381125,867,622 - 125,913,175 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1125,867,622 - 125,913,101 (-)EnsemblGRCm38mm10GRCm38
MGSCv371127,768,616 - 127,808,791 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361127,699,589 - 127,739,760 (-)NCBIMGSCv36mm8
Celera1128,530,811 - 128,571,285 (-)NCBICelera
Cytogenetic Map1E3NCBI
cM Map154.7NCBI
Lypd1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81339,874,937 - 39,922,385 (-)NCBIGRCr8
mRatBN7.21337,326,459 - 37,368,515 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1337,326,464 - 37,368,493 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1339,920,305 - 39,962,362 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01341,208,329 - 41,250,396 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01338,474,263 - 38,516,301 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01342,219,884 - 42,263,024 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1342,219,887 - 42,263,024 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01347,327,522 - 47,368,232 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41338,399,429 - 38,441,498 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1337,122,178 - 37,163,486 (-)NCBICelera
Cytogenetic Map13q12NCBI
LYPD1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21342,240,694 - 42,271,060 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B42,255,666 - 42,286,041 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B27,170,199 - 27,201,789 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B136,738,362 - 136,769,816 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B136,738,362 - 136,769,150 (-)Ensemblpanpan1.1panPan2
LYPD1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11935,586,096 - 35,630,468 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1935,586,283 - 35,630,160 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1935,815,887 - 35,859,926 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01937,021,072 - 37,065,212 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.11935,669,400 - 35,713,519 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01935,829,430 - 35,873,495 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01937,048,312 - 37,092,444 (-)NCBIUU_Cfam_GSD_1.0
Lypd1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530385,418,630 - 85,457,503 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493646956,168,734 - 56,197,997 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493646956,163,531 - 56,199,067 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LYPD1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1519,522,828 - 19,567,886 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11519,522,045 - 19,559,819 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21522,097,652 - 22,135,312 (+)NCBISscrofa10.2Sscrofa10.2susScr3
LYPD1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11016,910,145 - 16,941,915 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660615,577,790 - 5,609,350 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Lypd1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473232,045,612 - 32,073,548 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473232,045,585 - 32,075,013 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000004148   ⟹   ENSCLAP00000004067
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_004955440236,012 - 266,028 (-)Ensembl
RefSeq Acc Id: XM_005390733   ⟹   XP_005390790
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955440236,012 - 266,028 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005390790 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000004067
  ENSCLAP00000004067.1
Reference Protein Sequences
RefSeq Acc Id: XP_005390790   ⟸   XM_005390733
- UniProtKB: A0A8C2YJW8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000004067   ⟸   ENSCLAT00000004148


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000002904 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000004148 ENTREZGENE
  ENSCLAT00000004148.1 UniProtKB/TrEMBL
InterPro Snake_toxin-like_sf UniProtKB/TrEMBL
NCBI Gene Lypd1 ENTREZGENE
PANTHER CD59 GLYCOPROTEIN UniProtKB/TrEMBL
  LY6/PLAUR DOMAIN-CONTAINING PROTEIN 1 UniProtKB/TrEMBL
Superfamily-SCOP SSF57302 UniProtKB/TrEMBL
UniProt A0A8C2YJW8 ENTREZGENE, UniProtKB/TrEMBL