Usp2 (ubiquitin specific peptidase 2) - Rat Genome Database

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Gene: Usp2 (ubiquitin specific peptidase 2) Chinchilla lanigera
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Symbol: Usp2
Name: ubiquitin specific peptidase 2
RGD ID: 8839673
Description: ENCODES a protein that exhibits cyclin binding (ortholog); identical protein binding (ortholog); thiol-dependent deubiquitinase (ortholog); INVOLVED IN circadian behavior (ortholog); circadian regulation of gene expression (ortholog); entrainment of circadian clock by photoperiod (ortholog); ASSOCIATED WITH Dwarfism (ortholog); hepatocellular carcinoma (ortholog); RASopathy (ortholog); FOUND IN cell cortex (ortholog); centrosome (ortholog); cytoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: ubiquitin carboxyl-terminal hydrolase 2
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541220,433,302 - 20,457,493 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541220,435,778 - 20,461,898 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

References


Genomics

Comparative Map Data
Usp2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541220,433,302 - 20,457,493 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541220,435,778 - 20,461,898 (-)NCBIChiLan1.0ChiLan1.0
USP2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl11119,355,215 - 119,381,711 (-)EnsemblGRCh38hg38GRCh38
GRCh3811119,355,215 - 119,381,690 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh3711119,225,925 - 119,252,400 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3611118,732,163 - 118,757,575 (-)NCBINCBI36hg18NCBI36
Build 3411118,732,754 - 118,740,102NCBI
Celera11116,386,596 - 116,413,112 (-)NCBI
Cytogenetic Map11q23.3NCBI
HuRef11115,167,582 - 115,194,094 (-)NCBIHuRef
CHM1_111119,112,501 - 119,139,031 (-)NCBICHM1_1
Usp2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39943,978,318 - 44,006,924 (+)NCBIGRCm39mm39
GRCm39 Ensembl943,978,318 - 44,006,924 (+)Ensembl
GRCm38944,067,021 - 44,095,627 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl944,067,021 - 44,095,627 (+)EnsemblGRCm38mm10GRCm38
MGSCv37943,875,104 - 43,903,710 (+)NCBIGRCm37mm9NCBIm37
MGSCv36943,818,162 - 43,845,472 (+)NCBImm8
Celera941,325,008 - 41,353,422 (+)NCBICelera
Cytogenetic Map9A5.1NCBI
Usp2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2844,411,457 - 44,439,668 (+)NCBImRatBN7.2
Rnor_6.0 Ensembl848,406,260 - 48,430,885 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0848,403,985 - 48,432,525 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0847,020,039 - 47,048,354 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4847,052,085 - 47,076,321 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1847,060,850 - 47,085,070 (+)NCBI
Celera844,001,154 - 44,025,278 (+)NCBICelera
Cytogenetic Map8q22NCBI
USP2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.111118,124,350 - 118,150,868 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl11118,124,350 - 118,150,868 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v011114,196,725 - 114,223,411 (-)NCBIMhudiblu_PPA_v0panPan3
USP2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1514,525,685 - 14,550,914 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl514,525,797 - 14,549,291 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha514,579,281 - 14,604,451 (+)NCBI
ROS_Cfam_1.0514,469,193 - 14,494,315 (+)NCBI
UMICH_Zoey_3.1514,607,448 - 14,632,620 (+)NCBI
UNSW_CanFamBas_1.0514,511,479 - 14,536,582 (+)NCBI
UU_Cfam_GSD_1.0514,551,610 - 14,576,719 (+)NCBI
Usp2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947101,362,834 - 101,388,611 (-)NCBI
SpeTri2.0NW_0049365424,284,243 - 4,310,545 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
USP2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl946,563,480 - 46,590,265 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1946,563,469 - 46,590,392 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2951,595,416 - 51,622,353 (-)NCBISscrofa10.2Sscrofa10.2susScr3
USP2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11110,733,097 - 110,760,119 (-)NCBI
ChlSab1.1 Ensembl1110,734,737 - 110,742,186 (-)Ensembl
Vero_WHO_p1.0NW_02366604315,273,873 - 15,301,399 (+)NCBI
Usp2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462478414,729,762 - 14,755,982 (-)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000019173   ⟹   ENSCLAP00000018988
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495541220,433,302 - 20,457,493 (-)Ensembl
RefSeq Acc Id: ENSCLAT00000019174   ⟹   ENSCLAP00000018989
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495541220,433,302 - 20,444,877 (-)Ensembl
RefSeq Acc Id: XM_005378335   ⟹   XP_005378392
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541220,435,785 - 20,461,898 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005378336   ⟹   XP_005378393
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541220,435,778 - 20,459,547 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005378337   ⟹   XP_005378394
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541220,435,778 - 20,457,687 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005378338   ⟹   XP_005378395
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541220,435,778 - 20,456,718 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005378339   ⟹   XP_005378396
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541220,435,785 - 20,444,877 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005378340   ⟹   XP_005378397
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541220,435,778 - 20,444,691 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005378341   ⟹   XP_005378398
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541220,435,785 - 20,461,893 (-)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: XP_005378393   ⟸   XM_005378336
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_005378394   ⟸   XM_005378337
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_005378395   ⟸   XM_005378338
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_005378396   ⟸   XM_005378339
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_005378397   ⟸   XM_005378340
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_005378398   ⟸   XM_005378341
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_005378392   ⟸   XM_005378335
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSCLAP00000018989   ⟸   ENSCLAT00000019174
RefSeq Acc Id: ENSCLAP00000018988   ⟸   ENSCLAT00000019173


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000013003 Ensembl, ENTREZGENE
Ensembl Protein ENSCLAP00000018988 ENTREZGENE
  ENSCLAP00000018989 ENTREZGENE
Ensembl Transcript ENSCLAT00000019173 ENTREZGENE
  ENSCLAT00000019174 ENTREZGENE
NCBI Gene Usp2 ENTREZGENE