F13a1 (coagulation factor XIII A chain) - Rat Genome Database

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Gene: F13a1 (coagulation factor XIII A chain) Chinchilla lanigera
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Symbol: F13a1
Name: coagulation factor XIII A chain
RGD ID: 8839654
Description: ENCODES a protein that exhibits protein-glutamine gamma-glutamyltransferase activity (ortholog); INVOLVED IN blood coagulation (ortholog); blood coagulation, fibrin clot formation (ortholog); peptide cross-linking (ortholog); PARTICIPATES IN acenocoumarol pharmacodynamics pathway; alteplase pharmacodynamics pathway; aminocaproic acid pharmacodynamics pathway; ASSOCIATED WITH allergic contact dermatitis (ortholog); arteriosclerosis (ortholog); B-lymphoblastic leukemia/lymphoma (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: coagulation factor XIII, A1 polypeptide
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554657,443,166 - 7,617,436 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554657,444,118 - 7,617,366 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

References


Genomics

Comparative Map Data
F13a1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554657,443,166 - 7,617,436 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554657,444,118 - 7,617,366 (+)NCBIChiLan1.0ChiLan1.0
F13A1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl66,144,084 - 6,321,013 (-)EnsemblGRCh38hg38GRCh38
GRCh3866,144,084 - 6,320,662 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh3766,144,317 - 6,320,895 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3666,089,310 - 6,265,923 (-)NCBINCBI36hg18NCBI36
Build 3466,089,316 - 6,265,901NCBI
Celera67,372,733 - 7,550,578 (-)NCBI
Cytogenetic Map6p25.1NCBI
HuRef66,020,217 - 6,197,010 (-)NCBIHuRef
CHM1_166,146,854 - 6,323,031 (-)NCBICHM1_1
F13a1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391337,051,150 - 37,234,220 (-)NCBIGRCm39mm39
GRCm39 Ensembl1337,051,152 - 37,234,220 (-)Ensembl
GRCm381336,867,178 - 37,050,244 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1336,867,178 - 37,050,244 (-)EnsemblGRCm38mm10GRCm38
MGSCv371336,959,047 - 37,142,113 (-)NCBIGRCm37mm9NCBIm37
MGSCv361336,874,653 - 37,056,670 (-)NCBImm8
Celera1337,983,710 - 38,163,470 (-)NCBICelera
Cytogenetic Map13A3.3NCBI
F13a1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21727,815,723 - 27,992,494 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl1727,815,702 - 27,992,700 (+)Ensembl
Rnor_6.01728,504,650 - 28,680,015 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1728,504,623 - 28,680,362 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01730,406,396 - 30,581,441 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41734,093,525 - 34,270,498 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11734,096,401 - 34,272,682 (+)NCBI
Celera1727,443,244 - 27,619,724 (+)NCBICelera
Cytogenetic Map17p12NCBI
F13A1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.166,159,012 - 6,337,000 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl66,157,926 - 6,513,961 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v065,978,505 - 6,156,705 (-)NCBIMhudiblu_PPA_v0panPan3
F13A1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1356,186,750 - 6,347,522 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl356,187,235 - 6,349,773 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha356,191,814 - 6,354,808 (-)NCBI
ROS_Cfam_1.0356,267,724 - 6,430,557 (-)NCBI
UMICH_Zoey_3.1356,122,455 - 6,285,137 (-)NCBI
UNSW_CanFamBas_1.0356,148,410 - 6,311,467 (-)NCBI
UU_Cfam_GSD_1.0357,481,872 - 7,644,350 (-)NCBI
F13a1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494617,930,084 - 18,091,733 (+)NCBI
SpeTri2.0NW_0049365346,199,066 - 6,360,374 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
F13A1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl73,751,291 - 3,900,765 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.173,751,290 - 3,900,797 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.273,952,957 - 4,102,446 (-)NCBISscrofa10.2Sscrofa10.2susScr3
F13A1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11765,885,498 - 66,040,026 (+)NCBI
ChlSab1.1 Ensembl1765,885,658 - 66,040,040 (+)Ensembl
Vero_WHO_p1.0NW_0236660446,090,570 - 6,385,150 (-)NCBI
F13a1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462475619,103,064 - 19,259,632 (+)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000004283   ⟹   ENSCLAP00000004201
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554657,443,166 - 7,617,436 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000004284   ⟹   ENSCLAP00000004202
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554657,443,166 - 7,617,436 (+)Ensembl
RefSeq Acc Id: XM_013521832   ⟹   XP_013377286
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554657,463,088 - 7,617,366 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013521833   ⟹   XP_013377287
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554657,444,118 - 7,617,366 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013377286 (Get FASTA)   NCBI Sequence Viewer  
  XP_013377287 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_013377287   ⟸   XM_013521833
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_013377286   ⟸   XM_013521832
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSCLAP00000004202   ⟸   ENSCLAT00000004284
RefSeq Acc Id: ENSCLAP00000004201   ⟸   ENSCLAT00000004283


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000003000 Ensembl, ENTREZGENE
Ensembl Protein ENSCLAP00000004201 ENTREZGENE
  ENSCLAP00000004202 ENTREZGENE
Ensembl Transcript ENSCLAT00000004283 ENTREZGENE
  ENSCLAT00000004284 ENTREZGENE
NCBI Gene F13a1 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-03 F13a1  coagulation factor XIII A chain    coagulation factor XIII, A1 polypeptide  Symbol and/or name change 5135510 APPROVED