Thrsp (thyroid hormone responsive)

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Gene: Thrsp (thyroid hormone responsive) Chinchilla lanigera

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Symbol:

Thrsp

Name:

thyroid hormone responsive

RGD ID:

8839648

Description:

ENCODES a protein that exhibits identical protein binding (ortholog); molecular function inhibitor activity (ortholog); protein homodimerization activity (ortholog); INVOLVED IN regulation of lipid biosynthetic process (ortholog); regulation of triglyceride biosynthetic process (ortholog); response to bacterium (ortholog); ASSOCIATED WITH Animal Mammary Neoplasms (ortholog); attention deficit hyperactivity disorder (ortholog); carcinoma (ortholog); FOUND IN cytosol (ortholog); nucleoplasm (ortholog)

Type:

protein-coding

RefSeq Status:

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

ChiLan1.0 - Chinchilla ChiLan1.0 Assembly

Position:

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955414	13,879,095 - 13,883,378 (-)	NCBI	ChiLan1.0	ChiLan1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Animal Mammary Neoplasms (ISO)

attention deficit hyperactivity disorder (ISO)

carcinoma (ISO)

Experimental Mammary Neoplasms (ISO)

intellectual disability (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

regulation of lipid biosynthetic process (ISO)

regulation of triglyceride biosynthetic process (ISO)

response to bacterium (ISO)

Cellular Component

cytosol (ISO)

nucleoplasm (ISO)

Molecular Function

identical protein binding (ISO)

molecular function inhibitor activity (ISO)

protein binding (ISO)

protein homodimerization activity (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Transitive Annotation Pipeline	Automated assignment of GO, PW and RDO ISO annotations across species

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

Thrsp
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955414	13,879,095 - 13,883,378 (-)	NCBI	ChiLan1.0	ChiLan1.0

THRSP
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	11	78,063,861 - 78,068,351 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	11	78,063,861 - 78,068,351 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	11	77,774,907 - 77,779,397 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	11	77,452,555 - 77,457,045 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	11	77,452,554 - 77,457,044	NCBI
Celera	11	75,083,371 - 75,087,862 (+)	NCBI		Celera
Cytogenetic Map	11	q14.1	NCBI
HuRef	11	74,073,273 - 74,077,767 (+)	NCBI		HuRef
CHM1_1	11	77,658,098 - 77,662,594 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	11	77,997,088 - 78,001,580 (+)	NCBI		T2T-CHM13v2.0

Thrsp
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	7	97,062,140 - 97,066,757 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	7	97,062,145 - 97,066,937 (-)	Ensembl		GRCm39 Ensembl
GRCm38	7	97,412,933 - 97,417,550 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	7	97,412,938 - 97,417,730 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	7	104,561,467 - 104,566,020 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	7	97,288,149 - 97,292,702 (-)	NCBI		MGSCv36	mm8
Celera	7	97,723,964 - 97,728,458 (-)	NCBI		Celera
Cytogenetic Map	7	E1	NCBI
cM Map	7	53.49	NCBI

Thrsp
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	161,134,640 - 161,138,964 (-)	NCBI		GRCr8
mRatBN7.2	1	151,723,415 - 151,727,740 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	151,723,086 - 151,728,075 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	1	159,711,451 - 159,715,792 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	166,891,619 - 166,895,960 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	159,765,126 - 159,769,467 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	162,381,251 - 162,385,575 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	162,381,253 - 162,385,575 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	168,587,724 - 168,592,048 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	154,647,339 - 154,651,663 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	1	154,725,746 - 154,730,069 (-)	NCBI
Celera	1	149,823,345 - 149,827,669 (-)	NCBI		Celera
Cytogenetic Map	1	q32	NCBI

THRSP
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	9	78,996,033 - 78,997,431 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	11	80,039,905 - 80,041,303 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	11	73,123,030 - 73,128,461 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	11	76,747,532 - 76,751,718 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	11	76,747,547 - 76,747,987 (+)	Ensembl	panpan1.1		panPan2

THRSP
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	21	20,759,291 - 20,761,740 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	21	20,761,109 - 20,761,558 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	21	20,653,623 - 20,656,058 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	21	20,962,317 - 20,964,752 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	21	20,964,135 - 20,964,584 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	21	20,737,129 - 20,739,564 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	21	20,953,229 - 20,955,664 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	21	20,878,006 - 20,880,441 (-)	NCBI		UU_Cfam_GSD_1.0

Thrsp
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	65,013,973 - 65,025,358 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936498	6,622,004 - 6,624,961 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936498	6,622,007 - 6,624,961 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

THRSP
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	9	12,479,907 - 12,488,557 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	9	12,479,913 - 12,484,323 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	9	13,814,645 - 13,819,062 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

THRSP
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	1	69,269,174 - 69,274,270 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	1	69,269,746 - 69,270,198 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666043	56,472,709 - 56,477,534 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Thrsp
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624863	1,062,047 - 1,069,959 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624863	1,062,047 - 1,069,969 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005379823	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AGCD01015123	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GBDI01010753	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

XM_005379823 ⟹ XP_005379880

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955414	13,879,095 - 13,883,378 (-)	NCBI

Sequence:

show sequence

ACTGGAGTGATACTGGGCTCATGCATCTGCTAAGAGTTTTGTTTGAAATAAAGCATGGGGTAGA
AAAGCACCCCCCACGTAGAAGACCTCCAGGACATGAGCATGGTCCAACACTTTCTTCTCACTGG
GCTTTGGCTCCAGCATCCATGCTCTTTGCCCCACACCAGGCTGTTTGATTCTGTGGCCCTCTTC
CCTTGTCCATTTTACAACTGAGGCCAGGTTGAAGAAGTGGGTGGTGTGCTTTAGGAGGCCACCC
CAAGCAGGCAGCAAGCAGCAGCTTGACCTCAGGTAACCCAATAGAATGACCGATCGTCCTAGGG
TCAAGTGCACCAGCTGCCAAAGGGAAAAGCTTCCCTCGAACTGGCATTGCAAGCAGCTGCAGGA
AGAGCTGGGCCCTTGCTGAGGCAGGGCGTGGAACTGAAATGACCCCCAGAAGGTTGGCAGGTCT
GTCCCTGGGCAGACGGATCACCAGATACGGACGTCAGGGCCCAGACTCTGGAATTGGCTTAGAG
CTGTGTCAACCCAGCGGCTGGGTCTTGGCATCCTTTCAATCTGCCGTCTGAGCCAAAGCCTAGA
AATAGTGCTGGGGCAGCCTGGCCGGCTCAGTGTGCAAGAGGAGGCAGCCATGCAGGTGCTCAAC
AAGCGCTACCCCAAGAACTGCCTGCTGACCGTCATGGACCGGTACTCAGCCGTGGTACACAACA
TGGAGCAGGTGGTGATGATCCCCAGCCTCCTGCGGGACGTGCAGCTGATCGGGCCTGGGGAGCA
GGCCGAGGCCCCCGATCTCTACACCTACTTCACCATGCTCAAGGCCATCCGTGTGGAAGTGGAC
CACGGGCTGCTGCCGAGGGAAGAGTGGCAGGCCAAGGTGGCAGGCCGCCAGGCCGACAAAGCCG
AGAACGAGGAAGCTGTCGCCGTGGAGGCTGAGGAAGAGAGGAGCTCCAGAGAGGTGGACCTGGA
AGCCCAGTTCCATCTGCACTTCTCCAGCCTGCACCATATCCTCACCCACCTCACTCTGAAAGCC
CAGGAGGTGACGAGGAAGTACCAGGAAATGACAGGACAGGTCCTGTAAGGCCTCCAGCTCTGAG
GAAGATCACGCCACACAAGAGGCAGCCTCTGGGACGAGGACCCACAGTGATTCGTCAGCCCTGC
GAGCAGAAAGGCCTGGACCTGTAGCTGTGCAGGCCAAGTTGGCCCAGGATGCTTCCCTACTTCC
CTGCAAGCTCCAGTTTGCGGACTCGTCACTGGCTCACCTTAGGGTGTTTGTCGCTGCTTAGTTC
CTTTCCCTCCTTACCAACGTGGGGTGGTGACCAGTGGTTCACGAGCACCACCTGTCCAGTGTGG
GATCGCAGAATGAGCAGAATGTCAGCACAGGACCAGTGTTCACGTCCCTCCTGTGGGGTGTCAT
CCCATGGGATGTCAGACACGGTCACCCACCAGGGCCTGAATCCCCCCTCACACAAATCGGGAGT
CTGAATCTACCTCACAAGGTTACAGAAATGAAACAAGACGAATCAAAAGTACCTGGCATGTGAG
AGCTATTGTAATAGGCTGATTTTTTTCTCACCCTGTCCTATGTATCTGCTCTAGTCCTTGCTGT
TTTACAGAACTAAGAAGTAACAGAGGCCATTGCAGTAAGTGGCTCACCCTGCTGTACCTGCTCA
ACCCTGACTAAACAGATTAACTATAAATAAACGTATTTATTGTAGTAGCAATTTAAGAAAAAAA
AA

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Protein Sequences


Protein RefSeqs	XP_005379880	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	XP_005379880 ⟸ XM_005379823
- Sequence:	show sequence MQVLNKRYPKNCLLTVMDRYSAVVHNMEQVVMIPSLLRDVQLIGPGEQAEAPDLYTYFTMLKAI RVEVDHGLLPREEWQAKVAGRQADKAENEEAVAVEAEEERSSREVDLEAQFHLHFSSLHHILTH LTLKAQEVTRKYQEMTGQVL hide sequence

Additional Information

External Database Links

Database	Acc Id	Source(s)
NCBI Gene	Thrsp	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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