Mtrr (5-methyltetrahydrofolate-homocysteine methyltransferase reductase) - Rat Genome Database

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Gene: Mtrr (5-methyltetrahydrofolate-homocysteine methyltransferase reductase) Chinchilla lanigera
Analyze
Symbol: Mtrr
Name: 5-methyltetrahydrofolate-homocysteine methyltransferase reductase
RGD ID: 8839096
Description: ENCODES a protein that exhibits [methionine synthase] reductase (NADPH) activity (ortholog); FAD binding (ortholog); flavin adenine dinucleotide binding (ortholog); INVOLVED IN cobalamin metabolic process (ortholog); folic acid metabolic process (ortholog); homocysteine catabolic process (ortholog); PARTICIPATES IN altered folate cycle metabolic pathway; folate cycle metabolic pathway; folate mediated one-carbon metabolic pathway; ASSOCIATED WITH abdominal aortic aneurysm (ortholog); acute lymphoblastic leukemia (ortholog); acute myeloid leukemia (ortholog); FOUND IN cytosol (ortholog); intermediate filament cytoskeleton (ortholog); nucleoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: methionine synthase reductase
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555045,413,586 - 5,435,645 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555045,412,290 - 5,435,409 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Mtrr
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555045,413,586 - 5,435,645 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555045,412,290 - 5,435,409 (+)NCBIChiLan1.0ChiLan1.0
MTRR
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3857,850,859 - 7,901,113 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl57,851,186 - 7,906,025 (+)EnsemblGRCh38hg38GRCh38
GRCh3757,869,261 - 7,901,226 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3657,922,217 - 7,954,237 (+)NCBINCBI36Build 36hg18NCBI36
Build 3457,922,216 - 7,954,233NCBI
Celera57,910,259 - 7,942,243 (+)NCBICelera
Cytogenetic Map5p15.31NCBI
HuRef57,850,954 - 7,882,932 (+)NCBIHuRef
CHM1_157,869,302 - 7,901,279 (+)NCBICHM1_1
T2T-CHM13v2.057,789,841 - 7,840,236 (+)NCBIT2T-CHM13v2.0
Mtrr
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391368,708,897 - 68,730,273 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1368,708,899 - 68,730,268 (-)EnsemblGRCm39 Ensembl
GRCm381368,560,780 - 68,582,169 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1368,560,780 - 68,582,149 (-)EnsemblGRCm38mm10GRCm38
MGSCv371368,699,657 - 68,720,998 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361369,028,151 - 69,049,492 (-)NCBIMGSCv36mm8
Celera1370,920,592 - 70,941,889 (-)NCBICelera
Cytogenetic Map13B3NCBI
cM Map1335.54NCBI
Mtrr
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8136,695,376 - 36,727,341 (+)NCBIGRCr8
mRatBN7.2134,866,991 - 34,899,425 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl134,867,089 - 34,899,425 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx134,728,420 - 34,760,302 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0140,719,274 - 40,751,156 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0134,893,978 - 34,925,845 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0137,743,089 - 37,774,485 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl137,743,147 - 37,774,015 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0139,124,730 - 39,156,109 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4175,086,219 - 5,118,086 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1175,087,203 - 5,117,405 (+)NCBI
Celera133,436,562 - 33,468,429 (+)NCBICelera
Cytogenetic Map1p11NCBI
MTRR
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v248,106,696 - 8,156,871 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan156,260,305 - 6,310,480 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v058,195,868 - 8,228,071 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.158,017,373 - 8,049,322 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl58,017,403 - 8,049,322 (+)Ensemblpanpan1.1panPan2
MTRR
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1346,068,572 - 6,119,580 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl346,070,046 - 6,098,312 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3410,576,595 - 10,608,261 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0345,974,025 - 6,005,680 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl345,974,050 - 6,005,641 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1346,023,818 - 6,055,451 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0346,004,603 - 6,036,228 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0346,217,429 - 6,249,109 (-)NCBIUU_Cfam_GSD_1.0
Mtrr
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213238,993,011 - 239,023,047 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936643380,968 - 409,464 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936643379,790 - 410,034 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MTRR
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1674,245,228 - 74,270,783 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11674,245,214 - 74,270,828 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21680,297,640 - 80,323,444 (-)NCBISscrofa10.2Sscrofa10.2susScr3
MTRR
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.147,461,521 - 7,493,032 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl47,461,526 - 7,493,840 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606421,124,251 - 21,155,756 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Mtrr
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247515,445,241 - 5,469,657 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247515,445,274 - 5,469,386 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSCLAT00000005164   ⟹   ENSCLAP00000005071
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049555045,413,586 - 5,435,645 (+)Ensembl
RefSeq Acc Id: XM_005407073   ⟹   XP_005407130
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555045,412,290 - 5,435,409 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013505893   ⟹   XP_013361347
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555045,412,421 - 5,435,409 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005407130 (Get FASTA)   NCBI Sequence Viewer  
  XP_013361347 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000005071
  ENSCLAP00000005071.1
RefSeq Acc Id: XP_005407130   ⟸   XM_005407073
- UniProtKB: A0A8C2USE0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013361347   ⟸   XM_013505893
- UniProtKB: A0A8C2USE0 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSCLAP00000005071   ⟸   ENSCLAT00000005164

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000003599 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000005164 ENTREZGENE
  ENSCLAT00000005164.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.360 UniProtKB/TrEMBL
  3.40.50.80 UniProtKB/TrEMBL
  Translation factors UniProtKB/TrEMBL
InterPro CysJ-like_FAD-binding UniProtKB/TrEMBL
  FAD-bd_FR_type UniProtKB/TrEMBL
  Flavdoxin-like UniProtKB/TrEMBL
  Flavodoxin/NO_synth UniProtKB/TrEMBL
  Flavoprot_Pyr_Nucl_cyt_Rdtase UniProtKB/TrEMBL
  Flavoprotein-like_sf UniProtKB/TrEMBL
  FNR_nucleotide-bd UniProtKB/TrEMBL
  NADPH_Cyt_P450_Rdtase_alpha UniProtKB/TrEMBL
  OxRdtase_FAD/NAD-bd UniProtKB/TrEMBL
  Riboflavin_synthase-like_b-brl UniProtKB/TrEMBL
NCBI Gene Mtrr ENTREZGENE
PANTHER METHIONINE SYNTHASE REDUCTASE UniProtKB/TrEMBL
  NITRIC OXIDE SYNTHASE-RELATED UniProtKB/TrEMBL
Pfam FAD_binding_1 UniProtKB/TrEMBL
  Flavodoxin_1 UniProtKB/TrEMBL
  NAD_binding_1 UniProtKB/TrEMBL
PRINTS FLAVODOXIN UniProtKB/TrEMBL
  FPNCR UniProtKB/TrEMBL
PROSITE FAD_FR UniProtKB/TrEMBL
  FLAVODOXIN_LIKE UniProtKB/TrEMBL
Superfamily-SCOP SSF52218 UniProtKB/TrEMBL
  SSF52343 UniProtKB/TrEMBL
  SSF63380 UniProtKB/TrEMBL
UniProt A0A8C2USE0 ENTREZGENE, UniProtKB/TrEMBL