Clec1a (C-type lectin domain family 1 member A) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Clec1a (C-type lectin domain family 1 member A) Chinchilla lanigera
Analyze
Symbol: Clec1a
Name: C-type lectin domain family 1 member A
RGD ID: 8838902
Description: ASSOCIATED WITH aspergillosis (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: C-type lectin domain family 1, member A; C-type lectin domain family 7, member A; Clec7a
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554137,752,111 - 7,782,452 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554137,742,753 - 7,783,299 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References


Genomics

Comparative Map Data
Clec1a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554137,752,111 - 7,782,452 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554137,742,753 - 7,783,299 (+)NCBIChiLan1.0ChiLan1.0
CLEC1A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1210,069,554 - 10,111,627 (-)EnsemblGRCh38hg38GRCh38
GRCh381210,069,504 - 10,099,065 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371210,222,153 - 10,251,584 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361210,114,347 - 10,142,872 (-)NCBINCBI36hg18NCBI36
Build 341210,114,348 - 10,142,872NCBI
Celera1215,384,462 - 15,412,281 (-)NCBI
Cytogenetic Map12p13.2NCBI
HuRef129,965,967 - 9,994,748 (-)NCBIHuRef
CHM1_11210,192,412 - 10,220,875 (-)NCBICHM1_1
Clec1a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396129,403,647 - 129,428,963 (-)NCBIGRCm39mm39
GRCm39 Ensembl6129,401,735 - 129,428,963 (-)Ensembl
GRCm386129,426,684 - 129,452,000 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6129,424,772 - 129,452,000 (-)EnsemblGRCm38mm10GRCm38
MGSCv376129,376,702 - 129,402,018 (-)NCBIGRCm37mm9NCBIm37
MGSCv366129,392,381 - 129,417,514 (-)NCBImm8
Celera6131,148,656 - 131,173,967 (-)NCBICelera
Cytogenetic Map6F3NCBI
Clec1a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.24162,875,360 - 162,902,571 (-)NCBI
Rnor_6.0 Ensembl4163,191,503 - 163,214,678 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.04163,191,503 - 163,214,678 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.04211,833,524 - 211,859,026 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44166,700,657 - 166,722,031 (-)NCBIRGSC3.4rn4RGSC3.4
Celera4151,562,755 - 151,586,091 (-)NCBICelera
Cytogenetic Map4q42NCBI
CLEC1A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11210,363,429 - 10,404,994 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1210,359,392 - 10,418,806 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01210,115,664 - 10,145,766 (-)NCBIMhudiblu_PPA_v0panPan3
CLEC1A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12735,896,421 - 35,920,649 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2735,853,099 - 36,007,157 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2710,703,117 - 10,727,330 (-)NCBI
ROS_Cfam_1.02736,242,407 - 36,266,624 (+)NCBI
UMICH_Zoey_3.12736,130,274 - 36,154,472 (+)NCBI
UNSW_CanFamBas_1.02736,152,764 - 36,176,989 (+)NCBI
UU_Cfam_GSD_1.02710,225,032 - 10,249,251 (-)NCBI
Clec1a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494597,326,487 - 97,353,822 (+)NCBI
SpeTri2.0NW_004936902458,097 - 480,606 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CLEC1A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl561,849,135 - 61,876,044 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1561,849,042 - 61,870,288 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2564,520,892 - 64,540,332 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CLEC1A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1119,945,978 - 9,989,506 (-)NCBI
ChlSab1.1 Ensembl119,945,645 - 9,973,741 (-)Ensembl
Vero_WHO_p1.0NW_0236660892,019,884 - 2,051,121 (-)NCBI
Clec1a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462475226,837,373 - 26,855,663 (-)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000022284   ⟹   ENSCLAP00000022079
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554137,752,111 - 7,782,452 (+)Ensembl
RefSeq Acc Id: XM_005378939   ⟹   XP_005378996
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554137,751,719 - 7,783,299 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013511524   ⟹   XP_013366978
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554137,742,753 - 7,783,299 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013511525   ⟹   XP_013366979
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554137,744,330 - 7,783,299 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013511526   ⟹   XP_013366980
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554137,752,088 - 7,783,299 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013511527   ⟹   XP_013366981
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554137,746,320 - 7,783,299 (+)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: XP_005378996   ⟸   XM_005378939
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_013366978   ⟸   XM_013511524
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_013366979   ⟸   XM_013511525
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_013366981   ⟸   XM_013511527
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_013366980   ⟸   XM_013511526
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: ENSCLAP00000022079   ⟸   ENSCLAT00000022284


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000015131 Ensembl, ENTREZGENE
Ensembl Protein ENSCLAP00000022079 ENTREZGENE
Ensembl Transcript ENSCLAT00000022284 ENTREZGENE
NCBI Gene Clec1a ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-11-21 Clec1a  C-type lectin domain family 1 member A  Clec7a  C-type lectin domain family 7, member A  Data Merged 737654 PROVISIONAL
2016-08-03 Clec1a  C-type lectin domain family 1 member A    C-type lectin domain family 1, member A  Symbol and/or name change 5135510 APPROVED